Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P12740_001 | Banana | nucleus | 61.54 | 66.67 |
| GSMUA_Achr3P06620_001 | Banana | nucleus | 58.3 | 52.55 |
| OQU81036 | Sorghum | nucleus | 38.06 | 51.09 |
| GSMUA_Achr6P10310_001 | Banana | nucleus | 41.7 | 49.76 |
| Zm00001d020804_P001 | Maize | nucleus | 51.01 | 48.28 |
| GSMUA_Achr10P... | Banana | nucleus | 50.61 | 47.53 |
| EER96901 | Sorghum | nucleus | 51.82 | 46.89 |
| Os09t0470500-01 | Rice | nucleus | 52.23 | 46.57 |
| HORVU5Hr1G070260.1 | Barley | nucleus | 50.2 | 46.44 |
| GSMUA_Achr10P... | Banana | nucleus | 35.63 | 46.32 |
| TraesCS5B01G246700.1 | Wheat | nucleus | 49.8 | 45.72 |
| GSMUA_Achr7P11760_001 | Banana | nucleus | 46.56 | 45.63 |
| TraesCS5A01G249000.1 | Wheat | nucleus | 49.8 | 45.56 |
| TraesCS5D01G256200.1 | Wheat | nucleus | 49.8 | 45.56 |
| Os08t0481400-01 | Rice | nucleus | 49.39 | 45.35 |
| GSMUA_Achr9P14960_001 | Banana | nucleus | 51.42 | 45.2 |
| Zm00001d005951_P001 | Maize | nucleus | 50.61 | 40.98 |
| GSMUA_Achr2P14750_001 | Banana | extracellular, nucleus | 45.75 | 39.51 |
| TraesCS4A01G405800.1 | Wheat | nucleus | 38.87 | 33.68 |
| Os03t0188900-01 | Rice | nucleus | 39.68 | 31.51 |
| TraesCS4B01G305300.1 | Wheat | nucleus | 40.08 | 31.33 |
| TraesCS4D01G303500.1 | Wheat | nucleus | 40.08 | 31.33 |
| Zm00001d030532_P002 | Maize | nucleus | 37.65 | 30.49 |
| Zm00001d027991_P001 | Maize | nucleus | 40.08 | 30.37 |
| EER92730 | Sorghum | nucleus | 39.27 | 29.94 |
| Os10t0377300-01 | Rice | nucleus | 36.44 | 29.51 |
| GSMUA_Achr5P05300_001 | Banana | nucleus | 23.48 | 28.16 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 26.32 | 28.02 |
| GSMUA_Achr9P14570_001 | Banana | nucleus | 28.74 | 27.0 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 29.55 | 26.45 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 23.48 | 26.36 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 29.96 | 26.33 |
| GSMUA_Achr7P09730_001 | Banana | nucleus | 31.98 | 26.33 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 29.55 | 26.07 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 24.7 | 25.85 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 30.36 | 25.68 |
| GSMUA_Achr3P06190_001 | Banana | nucleus | 29.15 | 25.44 |
| Zm00001d048227_P001 | Maize | extracellular, nucleus, plastid | 38.06 | 25.41 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 29.96 | 25.26 |
| GSMUA_Achr8P25940_001 | Banana | nucleus | 29.15 | 25.09 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 28.34 | 24.73 |
| HORVU4Hr1G078410.5 | Barley | nucleus, plastid | 31.98 | 24.01 |
| GSMUA_Achr10P... | Banana | nucleus | 27.53 | 23.78 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 25.1 | 23.31 |
| GSMUA_Achr9P18360_001 | Banana | nucleus | 26.32 | 22.97 |
| GSMUA_Achr10P... | Banana | nucleus | 31.17 | 22.25 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 23.48 | 20.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr10G24810_001 | EnsemblPlants:GSMUA_Achr10P24810_001 | EnsemblPlants:GSMUA_Achr10T24810_001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | UniProt:M0RL56 | PFAM:PF00046 |
| PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF524 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000296FC4A | SEG:seg | : | : |
Description
Homeobox-leucine zipper protein HOX20 [Source:GMGC_GENE;Acc:GSMUA_Achr10G24810_001]
Coordinates
chr10:-:29084441..29085463
Molecular Weight (calculated)
27197.0 Da
IEP (calculated)
5.449
GRAVY (calculated)
-0.560
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSGGPRGAK KRRLSADQVR ALEKNFEVDN KLEPERKVRL AQELGLQPRQ VAVWFQNRRA RWKTKQLEHD YAALKASYDQ LRLDCDALRR DKESLLAEIK
101: ELRAKLAEDG SLSFCLGKED PVASDAEQKA TAPQEPPPLI CKDGSSDSDS SAVLNDAILN DDDSPRGLSS SASAPNILSV AAIGYGTFSS FPASPPPLLN
201: LDFRTLKPIG GLNHQNHAMK IEELLGVVEP CSGFFSDDQT PSPNWFY
101: ELRAKLAEDG SLSFCLGKED PVASDAEQKA TAPQEPPPLI CKDGSSDSDS SAVLNDAILN DDDSPRGLSS SASAPNILSV AAIGYGTFSS FPASPPPLLN
201: LDFRTLKPIG GLNHQNHAMK IEELLGVVEP CSGFFSDDQT PSPNWFY
001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
Arabidopsis Description
ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.