Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P18670_001 | Banana | nucleus | 65.91 | 50.0 |
| EER99231 | Sorghum | nucleus | 47.27 | 42.8 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 47.27 | 41.77 |
| Zm00001d021268_P001 | Maize | nucleus | 45.0 | 41.42 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 46.82 | 41.37 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 46.82 | 41.37 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 46.82 | 41.2 |
| Os09t0528200-01 | Rice | nucleus | 44.55 | 39.36 |
| Zm00001d006195_P001 | Maize | nucleus | 42.73 | 38.52 |
| VIT_02s0025g02590.t01 | Wine grape | nucleus | 32.27 | 36.98 |
| Solyc01g096320.2.1 | Tomato | nucleus | 38.64 | 35.56 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 31.36 | 35.2 |
| PGSC0003DMT400000694 | Potato | nucleus | 39.55 | 34.52 |
| CDX89136 | Canola | nucleus | 35.91 | 34.5 |
| KRH47840 | Soybean | nucleus | 37.27 | 34.45 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 35.0 | 34.22 |
| CDY71532 | Canola | nucleus | 35.45 | 34.21 |
| Bra014417.1-P | Field mustard | nucleus | 35.45 | 34.21 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 37.73 | 34.16 |
| CDX76591 | Canola | nucleus | 35.45 | 34.06 |
| KRH06407 | Soybean | nucleus | 37.73 | 33.88 |
| Solyc03g082550.2.1 | Tomato | nucleus | 31.82 | 33.49 |
| Bra007637.1-P | Field mustard | nucleus | 34.55 | 33.04 |
| CDY57869 | Canola | nucleus | 34.55 | 33.04 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 36.36 | 32.92 |
| AT3G61890.1 | Thale cress | nucleus | 35.0 | 32.77 |
| Bra004516.1-P | Field mustard | nucleus | 37.73 | 32.68 |
| CDX80037 | Canola | nucleus | 37.73 | 32.68 |
| KRH64347 | Soybean | nucleus | 36.36 | 32.65 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 32.73 | 32.58 |
| CDY41547 | Canola | nucleus | 37.27 | 32.28 |
| PGSC0003DMT400047622 | Potato | nucleus | 31.36 | 32.24 |
| KRH53589 | Soybean | nucleus | 36.36 | 31.87 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 32.27 | 31.56 |
| Solyc06g053220.2.1 | Tomato | nucleus | 32.27 | 31.56 |
| Bra039265.1-P | Field mustard | nucleus | 32.73 | 31.44 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 32.27 | 31.42 |
| EES05814 | Sorghum | nucleus | 35.45 | 31.2 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 36.82 | 31.15 |
| PGSC0003DMT400013968 | Potato | nucleus | 31.82 | 31.11 |
| Zm00001d017422_P001 | Maize | nucleus | 33.18 | 31.06 |
| AT2G46680.1 | Thale cress | nucleus | 36.36 | 31.01 |
| CDY27308 | Canola | nucleus | 32.27 | 31.0 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 36.82 | 30.57 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 35.91 | 29.7 |
| Os02t0649300-01 | Rice | nucleus | 34.09 | 28.74 |
| Os04t0541700-02 | Rice | nucleus | 35.91 | 28.62 |
| Zm00001d025964_P001 | Maize | nucleus | 34.09 | 27.99 |
| Zm00001d002799_P001 | Maize | nucleus | 33.18 | 27.97 |
| EES11198 | Sorghum | nucleus | 34.09 | 27.78 |
| GSMUA_Achr10P... | Banana | nucleus | 23.18 | 26.84 |
| GSMUA_Achr7P12740_001 | Banana | nucleus | 27.27 | 26.32 |
| GSMUA_Achr6P10310_001 | Banana | nucleus | 23.64 | 25.12 |
| GSMUA_Achr5P05300_001 | Banana | nucleus | 23.18 | 24.76 |
| GSMUA_Achr10P... | Banana | nucleus | 28.64 | 23.95 |
| GSMUA_Achr10P... | Banana | nucleus | 26.36 | 23.48 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 24.55 | 23.28 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 33.18 | 22.96 |
| GSMUA_Achr9P14570_001 | Banana | nucleus | 26.82 | 22.43 |
| GSMUA_Achr7P11760_001 | Banana | nucleus | 25.45 | 22.22 |
| GSMUA_Achr3P06620_001 | Banana | nucleus | 27.27 | 21.9 |
| GSMUA_Achr9P18360_001 | Banana | nucleus | 27.73 | 21.55 |
| GSMUA_Achr3P06190_001 | Banana | nucleus | 27.27 | 21.2 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 22.27 | 20.76 |
| GSMUA_Achr2P14750_001 | Banana | extracellular, nucleus | 26.82 | 20.63 |
| GSMUA_Achr9P14960_001 | Banana | nucleus | 25.45 | 19.93 |
| GSMUA_Achr8P25940_001 | Banana | nucleus | 25.45 | 19.51 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 23.18 | 19.17 |
| GSMUA_Achr7P09730_001 | Banana | nucleus | 25.91 | 19.0 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 24.09 | 18.86 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 23.64 | 18.84 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 24.55 | 18.49 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 23.18 | 18.21 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 24.09 | 18.09 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 23.18 | 18.02 |
| GSMUA_Achr10P... | Banana | nucleus | 22.27 | 17.13 |
| GSMUA_Achr10P... | Banana | nucleus | 26.36 | 16.76 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr1G16280_001 | EnsemblPlants:GSMUA_Achr1P16280_001 | EnsemblPlants:GSMUA_Achr1T16280_001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | UniProt:M0S0D6 | PFAM:PF00046 | PFAM:PF02183 |
| PRINTS:PR00031 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF346 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI000295EEFF | SEG:seg | : | : | : | : |
Description
Putative Homeobox-leucine zipper protein HOX6 [Source:GMGC_GENE;Acc:GSMUA_Achr1G16280_001]
Coordinates
chr1:-:12151144..12151974
Molecular Weight (calculated)
25340.0 Da
IEP (calculated)
4.605
GRAVY (calculated)
-1.211
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESEERCGG EEEEECCSKS SKGDRTRRFS EEQIRSLEST FEAQTKLEAR QKQQLARELG LQPRQVGIWF QNKRARWKSK QLDREYRALR ADYDALLSRF
101: DSLNKEKQLL LKQRQGLTEL LDKTEKNDRD AASKEKEWPR PSLKEEPDLE FAGCTEEEED DDDNTLSYLC EDEPGPRAVQ PATSSVPSSA EKQLHSATGR
201: AAAQTSCSNS PWWEFWPLSE
101: DSLNKEKQLL LKQRQGLTEL LDKTEKNDRD AASKEKEWPR PSLKEEPDLE FAGCTEEEED DDDNTLSYLC EDEPGPRAVQ PATSSVPSSA EKQLHSATGR
201: AAAQTSCSNS PWWEFWPLSE
001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
Arabidopsis Description
ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.