Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G387300.1 | Wheat | nucleus | 87.17 | 95.06 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 89.06 | 90.77 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 87.92 | 87.59 |
| Os04t0541700-02 | Rice | nucleus | 72.08 | 69.2 |
| Zm00001d002799_P001 | Maize | nucleus | 66.04 | 67.05 |
| EES11198 | Sorghum | nucleus | 68.3 | 67.04 |
| Zm00001d025964_P001 | Maize | nucleus | 62.26 | 61.57 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 51.32 | 61.54 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 34.72 | 36.95 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 30.57 | 36.82 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 29.43 | 34.67 |
| Solyc03g082550.2.1 | Tomato | nucleus | 26.42 | 33.49 |
| VIT_02s0025g02590.t01 | Wine grape | nucleus | 24.15 | 33.33 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 24.53 | 33.16 |
| PGSC0003DMT400047622 | Potato | nucleus | 26.42 | 32.71 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 29.81 | 32.51 |
| CDY27308 | Canola | nucleus | 27.55 | 31.88 |
| CDY71532 | Canola | nucleus | 27.17 | 31.58 |
| CDY41547 | Canola | nucleus | 29.81 | 31.1 |
| Bra039265.1-P | Field mustard | nucleus | 26.79 | 31.0 |
| CDX89136 | Canola | nucleus | 26.79 | 31.0 |
| Bra014417.1-P | Field mustard | nucleus | 26.42 | 30.7 |
| CDX76591 | Canola | nucleus | 26.04 | 30.13 |
| Bra004516.1-P | Field mustard | nucleus | 28.68 | 29.92 |
| CDX80037 | Canola | nucleus | 28.68 | 29.92 |
| AT2G46680.1 | Thale cress | nucleus | 29.06 | 29.84 |
| AT3G61890.1 | Thale cress | nucleus | 26.42 | 29.79 |
| Solyc06g053220.2.1 | Tomato | nucleus | 25.28 | 29.78 |
| Solyc01g096320.2.1 | Tomato | nucleus | 26.79 | 29.71 |
| KRH06407 | Soybean | nucleus | 27.17 | 29.39 |
| KRH47840 | Soybean | nucleus | 26.04 | 28.99 |
| PGSC0003DMT400013968 | Potato | nucleus | 24.53 | 28.89 |
| CDY57869 | Canola | nucleus | 24.91 | 28.7 |
| Bra007637.1-P | Field mustard | nucleus | 24.91 | 28.7 |
| KRH64347 | Soybean | nucleus | 26.42 | 28.57 |
| PGSC0003DMT400000694 | Potato | nucleus | 26.79 | 28.17 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 30.57 | 27.93 |
| KRH53589 | Soybean | nucleus | 26.42 | 27.89 |
| TraesCS5A01G249000.1 | Wheat | nucleus | 25.66 | 25.19 |
| TraesCS4A01G405800.1 | Wheat | nucleus | 23.77 | 22.11 |
| TraesCS5A01G199300.1 | Wheat | nucleus | 24.53 | 21.67 |
| TraesCS4A01G016600.1 | Wheat | nucleus, plastid | 24.91 | 19.53 |
| TraesCS6A01G290800.1 | Wheat | nucleus | 23.02 | 17.94 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF234 | SMART:SM00389 | SUPFAM:SSF46689 |
| EnsemblPlantsGene:TraesCS2A01G389400 | EnsemblPlants:TraesCS2A01G389400.1 | TIGR:cd00086 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2A:+:637984504..637985699
Molecular Weight (calculated)
29698.9 Da
IEP (calculated)
4.915
GRAVY (calculated)
-0.698
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYHHHHQQQ QQFLMPPPAS LPAQQQLCAP MMGMGMEMGM EMEMEMEMEM EEQLCFVGRG GGGRGAERKR RFTEEQTRSL ESMFHAHHAK LEPREKAELA
101: RELGLQPRQV AIWFQNKRAR WRSKQLEHDF AALRADYDAL HSRVESLKHE KLALAAQLQE LSERLRERDG GGGGAATATA SSSSCNGGGR ELDDDKRNVV
201: DVEPPESCVL GGTACGTPAD VSASVESECD DHLHYDGAVF PESFCATPEL WEPWPWPPVE WNAVA
101: RELGLQPRQV AIWFQNKRAR WRSKQLEHDF AALRADYDAL HSRVESLKHE KLALAAQLQE LSERLRERDG GGGGAATATA SSSSCNGGGR ELDDDKRNVV
201: DVEPPESCVL GGTACGTPAD VSASVESECD DHLHYDGAVF PESFCATPEL WEPWPWPPVE WNAVA
001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
Arabidopsis Description
ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.