Factsheet for TraesCS5A01G199300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G205000.1	Wheat	nucleus	96.67	96.99
TraesCS5B01G197700.1	Wheat	nucleus	95.67	95.99
HORVU5Hr1G059410.2	Barley	nucleus	78.67	71.95
Zm00001d005692_P001	Maize	nucleus	53.0	56.18
EER98832	Sorghum	nucleus	57.67	54.57
Os09t0379600-00	Rice	nucleus	37.67	53.81
GSMUA_Achr8P25940_001	Banana	nucleus	36.33	37.98
GSMUA_Achr9P18360_001	Banana	nucleus	35.0	37.1
VIT_14s0066g01440.t01	Wine grape	nucleus	31.33	34.43
Bra039116.1-P	Field mustard	nucleus	29.33	33.85
CDY37519	Canola	nucleus	29.33	33.85
AT3G01470.1	Thale cress	nucleus	30.67	33.82
TraesCS6A01G290800.1	Wheat	nucleus	38.0	33.53
CDY49056	Canola	nucleus	29.33	33.46
CDY28673	Canola	nucleus	30.0	33.09
Bra040519.1-P	Field mustard	nucleus	29.67	32.48
Solyc02g086930.2.1	Tomato	nucleus	30.67	32.28
PGSC0003DMT400001322	Potato	nucleus	30.33	31.93
TraesCS5A01G249000.1	Wheat	nucleus	28.67	31.85
TraesCS6A01G240400.1	Wheat	nucleus	23.0	31.22
KRH20316	Soybean	nucleus	29.0	30.53
KRG93337	Soybean	nucleus	27.0	30.34
TraesCS4A01G405800.1	Wheat	nucleus	26.0	27.37
TraesCS5A01G316800.1	Wheat	nucleus	20.67	24.9
TraesCS2A01G389400.1	Wheat	nucleus	21.67	24.53
TraesCS4A01G016600.1	Wheat	nucleus, plastid	26.67	23.67

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF215	SMART:SM00389	SUPFAM:SSF46689
EnsemblPlantsGene:TraesCS5A01G199300	EnsemblPlants:TraesCS5A01G199300.1	TIGR:cd00086	SEG:seg	:	:

Description

No Description!

Coordinates

chr5A:-:404177302..404178633

Molecular Weight (calculated)

32715.0 Da

IEP (calculated)

4.566

GRAVY (calculated)

-0.569

Length

300 amino acids

Sequence
(BLAST)

001: MESGRLIFGS AAPCRAAGGG GGQMMLFGGS GSFLGGSPVV AGVEDGRRKR PFLTTVDEEL QMDEEMYGYY GLDEHAPERK RRLTAEQVRA LERSFEEEKR
101: KLEPERKSEL ARRLGIAPRQ VAVWFQNRRA RWKAKQLEQD FDALRAAHDE LLAGRDALLA DNHRLRSQVT SLTEKLQAKE SSELEERTAV SGTADAGVPA
201: VELKEGYAAC DGAAGLLLAG FAGGANDSPE SNSYLADARS PPSSSDDDCA GAVSGELNSC ALFLPEYAML DVAAAERGSV QQGEEEEEEA QRKYWAWFWS

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.