Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G323100.2 | Wheat | nucleus | 98.8 | 98.8 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 97.99 | 97.99 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 95.98 | 95.6 |
| Zm00001d021268_P001 | Maize | nucleus | 67.07 | 69.87 |
| EER99231 | Sorghum | nucleus | 67.47 | 69.14 |
| Os09t0528200-01 | Rice | nucleus | 67.47 | 67.47 |
| Zm00001d006195_P001 | Maize | nucleus | 59.44 | 60.66 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 41.37 | 46.82 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 45.78 | 39.31 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 38.15 | 39.09 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 34.54 | 38.22 |
| CDY71532 | Canola | nucleus | 34.94 | 38.16 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 33.73 | 38.01 |
| CDX89136 | Canola | nucleus | 34.94 | 37.99 |
| KRH47840 | Soybean | nucleus | 36.14 | 37.82 |
| Bra014417.1-P | Field mustard | nucleus | 34.54 | 37.72 |
| KRH06407 | Soybean | nucleus | 36.95 | 37.55 |
| Solyc01g096320.2.1 | Tomato | nucleus | 35.34 | 36.82 |
| CDX76591 | Canola | nucleus | 33.73 | 36.68 |
| AT3G61890.1 | Thale cress | nucleus | 34.54 | 36.6 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 28.51 | 36.22 |
| CDY57869 | Canola | nucleus | 33.33 | 36.09 |
| Bra007637.1-P | Field mustard | nucleus | 33.33 | 36.09 |
| PGSC0003DMT400000694 | Potato | nucleus | 35.34 | 34.92 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 36.95 | 34.72 |
| Bra004516.1-P | Field mustard | nucleus | 35.34 | 34.65 |
| CDX80037 | Canola | nucleus | 35.34 | 34.65 |
| Solyc03g082550.2.1 | Tomato | nucleus | 28.92 | 34.45 |
| VIT_02s0025g02590.t01 | Wine grape | nucleus | 26.51 | 34.38 |
| CDY41547 | Canola | nucleus | 34.94 | 34.25 |
| PGSC0003DMT400047622 | Potato | nucleus | 29.32 | 34.11 |
| Solyc06g053220.2.1 | Tomato | nucleus | 29.72 | 32.89 |
| PGSC0003DMT400013968 | Potato | nucleus | 29.72 | 32.89 |
| CDY27308 | Canola | nucleus | 30.12 | 32.75 |
| KRH64347 | Soybean | nucleus | 32.13 | 32.65 |
| AT2G46680.1 | Thale cress | nucleus | 33.73 | 32.56 |
| Bra039265.1-P | Field mustard | nucleus | 29.72 | 32.31 |
| KRH53589 | Soybean | nucleus | 32.53 | 32.27 |
| TraesCS5A01G249000.1 | Wheat | nucleus | 27.71 | 25.56 |
| TraesCS4A01G405800.1 | Wheat | nucleus | 24.9 | 21.75 |
| TraesCS5A01G199300.1 | Wheat | nucleus | 24.9 | 20.67 |
| TraesCS6A01G290800.1 | Wheat | nucleus | 25.3 | 18.53 |
| TraesCS4A01G016600.1 | Wheat | nucleus, plastid | 23.69 | 17.46 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF122 | SMART:SM00389 | SUPFAM:SSF46689 |
| EnsemblPlantsGene:TraesCS5A01G316800 | EnsemblPlants:TraesCS5A01G316800.1 | TIGR:cd00086 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5A:-:527904954..527905823
Molecular Weight (calculated)
27501.9 Da
IEP (calculated)
4.699
GRAVY (calculated)
-0.779
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQGEEDGDW MVEPAAGKKG GAMIDRKKRF SEEQIKSLES MFATQTKLEP RQKLQLAREL GLQPRQVAIW FQNKRARWKS KQLERQYAAL RDDYDALLSS
101: YDQLKKDKQA LLNQLEKLAE MLREPGGAKC GDNAGAAARD DERLAVAGMS MKDEFVDAGG ASKLYSASEG CGGSGKLSLF GEEDDDAGLF LRPSLQLPTA
201: HDGGFTASGP AEYQQQSPSS FPFHSSWPSS AAEQTCSSSQ WWEFESPSE
101: YDQLKKDKQA LLNQLEKLAE MLREPGGAKC GDNAGAAARD DERLAVAGMS MKDEFVDAGG ASKLYSASEG CGGSGKLSLF GEEDDDAGLF LRPSLQLPTA
201: HDGGFTASGP AEYQQQSPSS FPFHSSWPSS AAEQTCSSSQ WWEFESPSE
001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
Arabidopsis Description
ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.