Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039265.1-P | Field mustard | nucleus | 96.07 | 96.07 |
| CDY41547 | Canola | nucleus | 77.73 | 70.08 |
| CDX80037 | Canola | nucleus | 76.42 | 68.9 |
| AT2G46680.1 | Thale cress | nucleus | 75.98 | 67.44 |
| CDX89136 | Canola | nucleus | 58.08 | 58.08 |
| CDY57869 | Canola | nucleus | 58.08 | 57.83 |
| CDY71532 | Canola | nucleus | 57.21 | 57.46 |
| CDX76591 | Canola | nucleus | 57.21 | 57.21 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 48.03 | 45.27 |
| KRH47840 | Soybean | nucleus | 46.72 | 44.96 |
| KRH06407 | Soybean | nucleus | 47.6 | 44.49 |
| PGSC0003DMT400000694 | Potato | nucleus | 45.85 | 41.67 |
| Solyc01g096320.2.1 | Tomato | nucleus | 42.79 | 41.0 |
| EER99231 | Sorghum | nucleus | 35.37 | 33.33 |
| Zm00001d021268_P001 | Maize | nucleus | 34.5 | 33.05 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 31.0 | 32.27 |
| Os09t0528200-01 | Rice | nucleus | 34.5 | 31.73 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 33.62 | 30.92 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 32.75 | 30.86 |
| CDY48942 | Canola | nucleus | 21.83 | 30.86 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 33.62 | 30.8 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 33.19 | 30.52 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 32.75 | 30.12 |
| Zm00001d006195_P001 | Maize | nucleus | 31.44 | 29.51 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 27.95 | 28.96 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 32.75 | 28.85 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 32.75 | 28.2 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 27.51 | 28.0 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 34.93 | 27.59 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 31.88 | 27.55 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 27.07 | 27.43 |
| Zm00001d017422_P001 | Maize | nucleus | 27.95 | 27.23 |
| EES05814 | Sorghum | nucleus | 29.69 | 27.2 |
| Os04t0541700-02 | Rice | nucleus | 32.75 | 27.17 |
| CDY11680 | Canola | nucleus | 20.96 | 26.97 |
| CDX67451 | Canola | nucleus | 20.96 | 26.97 |
| Zm00001d002799_P001 | Maize | nucleus | 30.57 | 26.82 |
| EES11198 | Sorghum | nucleus | 31.0 | 26.3 |
| Zm00001d025964_P001 | Maize | nucleus | 30.13 | 25.75 |
| CDX99719 | Canola | nucleus | 21.4 | 25.13 |
| Os02t0649300-01 | Rice | nucleus | 27.51 | 24.14 |
| CDX75029 | Canola | nucleus | 19.21 | 23.53 |
| CDY33168 | Canola | nucleus | 19.21 | 23.28 |
| CDY37519 | Canola | nucleus | 26.2 | 23.08 |
| CDY69536 | Canola | nucleus | 15.72 | 23.08 |
| CDY28803 | Canola | nucleus | 15.72 | 23.08 |
| CDY49056 | Canola | nucleus | 26.2 | 22.81 |
| CDY28673 | Canola | nucleus | 26.64 | 22.43 |
| CDY25596 | Canola | nucleus | 25.76 | 22.18 |
| CDY13761 | Canola | nucleus | 28.82 | 21.22 |
| CDY11269 | Canola | nucleus | 20.09 | 21.1 |
| CDX80887 | Canola | nucleus | 20.09 | 21.1 |
| CDX89467 | Canola | nucleus | 27.51 | 21.0 |
| CDY25597 | Canola | nucleus | 27.07 | 20.74 |
| CDY48391 | Canola | nucleus | 22.71 | 20.63 |
| CDX70284 | Canola | nucleus | 20.52 | 20.43 |
| CDY10356 | Canola | nucleus | 20.52 | 20.43 |
| CDY69290 | Canola | nucleus | 22.27 | 20.4 |
| CDY69618 | Canola | nucleus | 27.07 | 20.33 |
| CDX76923 | Canola | nucleus | 27.51 | 20.32 |
| CDX70283 | Canola | nucleus | 19.21 | 20.09 |
| CDY71047 | Canola | nucleus | 20.09 | 20.0 |
| CDX75697 | Canola | nucleus | 25.76 | 20.0 |
| CDY38759 | Canola | nucleus | 24.45 | 19.72 |
| CDY67332 | Canola | nucleus | 26.2 | 19.67 |
| CDX69357 | Canola | nucleus | 25.33 | 19.66 |
| CDY42007 | Canola | nucleus | 18.78 | 19.63 |
| CDY44091 | Canola | nucleus | 22.71 | 19.55 |
| CDY39476 | Canola | nucleus | 24.02 | 19.5 |
| CDY11659 | Canola | nucleus | 24.45 | 19.44 |
| CDY04896 | Canola | nucleus | 19.21 | 19.38 |
| CDX90376 | Canola | nucleus | 24.02 | 19.3 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 26.64 | 19.18 |
| CDY69034 | Canola | nucleus | 22.27 | 19.03 |
| CDY46427 | Canola | nucleus | 20.96 | 18.9 |
| CDY52767 | Canola | nucleus | 20.96 | 18.9 |
| CDY23547 | Canola | nucleus | 22.71 | 18.57 |
| CDY37819 | Canola | nucleus | 24.89 | 18.39 |
| CDY33967 | Canola | nucleus | 24.89 | 18.39 |
| CDX78614 | Canola | nucleus | 24.02 | 18.27 |
| CDY70306 | Canola | nucleus | 23.14 | 18.15 |
| CDX70596 | Canola | nucleus | 24.02 | 18.09 |
| CDX85054 | Canola | nucleus | 24.02 | 17.92 |
| CDX69546 | Canola | nucleus | 24.02 | 17.8 |
| CDY28696 | Canola | nucleus | 20.09 | 17.42 |
| CDY70870 | Canola | nucleus | 22.71 | 17.28 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078GRP2 | UniProt:A0A078GRP2 | EnsemblPlants:CDY27308 | ProteinID:CDY27308 |
| ProteinID:CDY27308.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00037243001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo |
| PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF346 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EF2684 | SEG:seg | : | : |
Description
BnaC04g50970DBnaC04g50970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRP2]
Coordinates
chrLK032203:+:6158..7388
Molecular Weight (calculated)
26748.4 Da
IEP (calculated)
5.287
GRAVY (calculated)
-0.997
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSADPFMTM KKIKKSSHNE KNQRRFSEEQ IKSLEMMFES ETRLEPRKKV QLARELSLQP RQVAIWFQNK RARWKSKQLE TEFNILRQNY NDLASQFESL
101: KKENQGLVSE LDRLNEAMQK KRVEGRECCG DQTVVALSST DHESEKEENT NPEPEEVRPD MEVYEKGHHD DYGYNSHIKR EYFGGFEEEA DHLMNIVEPA
201: DSCLTSSVGW REVFGPANDS SMARILAGF
101: KKENQGLVSE LDRLNEAMQK KRVEGRECCG DQTVVALSST DHESEKEENT NPEPEEVRPD MEVYEKGHHD DYGYNSHIKR EYFGGFEEEA DHLMNIVEPA
201: DSCLTSSVGW REVFGPANDS SMARILAGF
001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
Arabidopsis Description
ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.