Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05814 | Sorghum | nucleus | 85.96 | 80.8 |
| Os02t0649300-01 | Rice | nucleus | 72.34 | 65.13 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 57.02 | 60.63 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 57.87 | 60.44 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 57.02 | 59.29 |
| Zm00001d002799_P001 | Maize | nucleus | 54.47 | 49.04 |
| Zm00001d025964_P001 | Maize | nucleus | 53.62 | 47.01 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 57.87 | 42.77 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 32.77 | 34.22 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 31.06 | 33.18 |
| Zm00001d021268_P001 | Maize | nucleus | 33.62 | 33.05 |
| Zm00001d006195_P001 | Maize | nucleus | 34.04 | 32.79 |
| PGSC0003DMT400047622 | Potato | nucleus | 28.94 | 31.78 |
| VIT_02s0025g02590.t01 | Wine grape | nucleus | 25.96 | 31.77 |
| Solyc03g082550.2.1 | Tomato | nucleus | 27.66 | 31.1 |
| CDX89136 | Canola | nucleus | 28.51 | 29.26 |
| CDY41547 | Canola | nucleus | 31.49 | 29.13 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 24.26 | 29.08 |
| CDY71532 | Canola | nucleus | 28.09 | 28.95 |
| Bra014417.1-P | Field mustard | nucleus | 28.09 | 28.95 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 29.79 | 28.81 |
| Solyc06g053220.2.1 | Tomato | nucleus | 27.23 | 28.44 |
| Bra004516.1-P | Field mustard | nucleus | 30.64 | 28.35 |
| CDX80037 | Canola | nucleus | 30.64 | 28.35 |
| PGSC0003DMT400013968 | Potato | nucleus | 26.81 | 28.0 |
| CDX76591 | Canola | nucleus | 27.23 | 27.95 |
| CDY27308 | Canola | nucleus | 27.23 | 27.95 |
| AT3G61890.1 | Thale cress | nucleus | 27.66 | 27.66 |
| AT2G46680.1 | Thale cress | nucleus | 30.21 | 27.52 |
| Solyc01g096320.2.1 | Tomato | nucleus | 27.66 | 27.2 |
| Bra039265.1-P | Field mustard | nucleus | 26.38 | 27.07 |
| CDY57869 | Canola | nucleus | 26.38 | 26.96 |
| Bra007637.1-P | Field mustard | nucleus | 26.38 | 26.96 |
| KRH06407 | Soybean | nucleus | 28.09 | 26.94 |
| KRH47840 | Soybean | nucleus | 27.23 | 26.89 |
| PGSC0003DMT400000694 | Potato | nucleus | 28.51 | 26.59 |
| KRH64347 | Soybean | nucleus | 27.66 | 26.53 |
| KRH53589 | Soybean | nucleus | 28.09 | 26.29 |
| Zm00001d020804_P001 | Maize | nucleus | 28.09 | 25.29 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 29.36 | 23.79 |
| Zm00001d005692_P001 | Maize | nucleus | 28.09 | 23.32 |
| Zm00001d050310_P001 | Maize | nucleus | 26.38 | 22.79 |
| Zm00001d032316_P001 | Maize | nucleus | 25.53 | 22.22 |
| Zm00001d005951_P001 | Maize | nucleus | 28.51 | 21.97 |
| Zm00001d027852_P001 | Maize | nucleus | 31.91 | 21.8 |
| Zm00001d048312_P001 | Maize | nucleus | 31.91 | 21.8 |
| Zm00001d017920_P001 | Maize | nucleus | 30.21 | 21.52 |
| Zm00001d030532_P002 | Maize | nucleus | 27.23 | 20.98 |
| Zm00001d014201_P001 | Maize | nucleus | 31.06 | 20.98 |
| Zm00001d051749_P001 | Maize | nucleus | 30.21 | 20.94 |
| Zm00001d033005_P001 | Maize | nucleus | 31.06 | 20.11 |
| Zm00001d027991_P001 | Maize | nucleus | 27.66 | 19.94 |
| Zm00001d048227_P001 | Maize | extracellular, nucleus, plastid | 24.26 | 15.41 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | UniProt:A0A1D6HER1 | ProteinID:AQK73135.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF341 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI000220AD02 | EnsemblPlantsGene:Zm00001d017422 | EnsemblPlants:Zm00001d017422_P001 | EnsemblPlants:Zm00001d017422_T001 | SEG:seg | : |
Description
Homeobox-transcription factor 41Homeobox-leucine zipper protein ATHB-6
Coordinates
chr5:-:195636860..195637865
Molecular Weight (calculated)
26414.4 Da
IEP (calculated)
4.772
GRAVY (calculated)
-0.814
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MERGDCQFTV VPPRQYDEAQ FMHQLMVAGD QQDPAGAGRG AAAAGGERKR RFTEEQVRSL ETTFHARRAK LEPREKAELA RELGLQPRQV AIWFQNKRAR
101: WRSKQLEHDY AALRAQFDAM HARVESLRQE KIALAAQVDE LRGRLNERQD QSGSCEVNDA EAAADDKRNN STSSLVQDDG ATPPPAAVDA SEDSAATGEY
201: YDHVAYEYDG LHDPFVCATP DLWDTWPLLE WNAVA
101: WRSKQLEHDY AALRAQFDAM HARVESLRQE KIALAAQVDE LRGRLNERQD QSGSCEVNDA EAAADDKRNN STSSLVQDDG ATPPPAAVDA SEDSAATGEY
201: YDHVAYEYDG LHDPFVCATP DLWDTWPLLE WNAVA
001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
Arabidopsis Description
ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.