Factsheet for VIT_15s0048g02870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47840	Soybean	nucleus	56.38	57.56
KRH06407	Soybean	nucleus	58.02	57.55
Solyc01g096320.2.1	Tomato	nucleus	53.5	54.39
PGSC0003DMT400000694	Potato	nucleus	54.32	52.38
CDX89136	Canola	nucleus	48.56	51.53
Bra014417.1-P	Field mustard	nucleus	48.15	51.32
CDY71532	Canola	nucleus	47.74	50.88
CDX76591	Canola	nucleus	47.33	50.22
CDY41547	Canola	nucleus	51.85	49.61
Bra007637.1-P	Field mustard	nucleus	46.91	49.57
CDY57869	Canola	nucleus	46.91	49.57
Bra004516.1-P	Field mustard	nucleus	51.44	49.21
CDX80037	Canola	nucleus	51.44	49.21
AT3G61890.1	Thale cress	nucleus	46.91	48.51
AT2G46680.1	Thale cress	nucleus	51.03	48.06
Bra039265.1-P	Field mustard	nucleus	45.27	48.03
CDY27308	Canola	nucleus	45.27	48.03
VIT_16s0098g01170.t01	Wine grape	nucleus	42.8	46.22
VIT_02s0025g02590.t01	Wine grape	nucleus	33.33	42.19
TraesCS5B01G317400.1	Wheat	nucleus	39.92	38.96
TraesCS5D01G323100.2	Wheat	nucleus	39.51	38.55
HORVU5Hr1G081090.1	Barley	nucleus	39.51	38.4
TraesCS5A01G316800.1	Wheat	nucleus	39.09	38.15
EER99231	Sorghum	nucleus	37.86	37.86
GSMUA_Achr1P16280_001	Banana	nucleus	34.16	37.73
Zm00001d021268_P001	Maize	nucleus	37.04	37.66
Os09t0528200-01	Rice	nucleus	37.45	36.55
Zm00001d006195_P001	Maize	nucleus	36.21	36.07
TraesCS6A01G240400.1	Wheat	nucleus	29.63	32.58
TraesCS2D01G387300.1	Wheat	nucleus	32.51	32.51
TraesCS6D01G222600.1	Wheat	nucleus	29.63	32.0
VIT_19s0014g02110.t01	Wine grape	nucleus	20.99	31.68
TraesCS6B01G284300.1	Wheat	nucleus	29.22	31.42
TraesCS2B01G407600.1	Wheat	nucleus	32.92	30.77
Os04t0541700-02	Rice	nucleus	34.57	30.43
EES05814	Sorghum	nucleus	31.28	30.4
Zm00001d002799_P001	Maize	nucleus	32.51	30.27
Zm00001d025964_P001	Maize	nucleus	32.92	29.85
TraesCS2A01G389400.1	Wheat	nucleus	32.51	29.81
Zm00001d017422_P001	Maize	nucleus	28.81	29.79
HORVU2Hr1G092710.2	Barley	nucleus	32.1	29.32
EES11198	Sorghum	nucleus	32.51	29.26
GSMUA_Achr1P18670_001	Banana	nucleus	34.57	28.97
Os02t0649300-01	Rice	nucleus	30.86	28.74
VIT_10s0003g00380.t01	Wine grape	nucleus	19.75	28.07
VIT_14s0066g01440.t01	Wine grape	nucleus	31.28	27.84
VIT_18s0001g06430.t01	Wine grape	nucleus	32.1	27.18
VIT_08s0007g04200.t01	Wine grape	nucleus	22.22	24.55
VIT_01s0026g01550.t01	Wine grape	nucleus	31.28	23.68
VIT_17s0000g05630.t01	Wine grape	nucleus	29.63	22.71
HORVU6Hr1G061390.1	Barley	nucleus	28.4	21.7
VIT_01s0026g01950.t01	Wine grape	nucleus	24.69	21.05
VIT_07s0191g00180.t01	Wine grape	nucleus	28.81	20.9
VIT_14s0108g00390.t01	Wine grape	nucleus	24.28	20.85

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100245524	wikigene:100245524	MapMan:15.5.3.1	ProteinID:CCB61280	ProteinID:CCB61280.1
ncoils:Coil	UniProt:F6I2W3	EMBL:FN596739	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100245524	wikigene:LOC100245524	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF346	SMART:SM00389	SUPFAM:SSF46689
TIGR:TC59629	UniParc:UPI0002109405	ArrayExpress:VIT_15s0048g02870	EnsemblPlantsGene:VIT_15s0048g02870	EnsemblPlants:VIT_15s0048g02870.t01	unigene:Vvi.2402
RefSeq:XP_002262950	RefSeq:XP_002262950.2	:	:	:	:

Description

No Description!

Coordinates

chr15:+:16989776..16991236

Molecular Weight (calculated)

27834.4 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.886

Length

243 amino acids

Sequence
(BLAST)

001: MLGGEEYKYS PMAAVDDGSL ACLNSIATAR KKKEKNKRRF SDEQIRLLES MFESETKLEP RKKLQVAKEL GLQPRQVAIW FQNKRARWKS KQLERDYSIL
101: RGNYNSLVSR FESLKKEKQA LVIQLQKLNE MVQQSGGAKQ DSEQRLVQNS AESEADNRDN GNCESEVKPN LSLERSEHGG GVLSDDDSSI RADYFVMEEE
201: PSLLTMVEPV DGCLTSPEDW GSWDSENVFD QSSGSYQWWD FWG

Best Arabidopsis Sequence Match ( AT2G46680.1 )
(BLAST)

001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS

Arabidopsis Description

ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.