Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0025g02250.t01 | |
| VIT_04s0079g00280.t01 | |
| VIT_15s0021g02720.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53980.1 | VIT_02s0025g02250.t01 | AT1G64620.1 | 21245844 |
| AT5G53980.1 | VIT_04s0079g00280.t01 | AT3G03200.1 | 21245844 |
| AT5G53980.1 | VIT_15s0021g02720.t01 | AT3G60580.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g00380.t01 | Wine grape | nucleus | 52.8 | 49.71 |
| PGSC0003DMT400032390 | Potato | nucleus | 52.17 | 47.46 |
| Solyc07g062790.1.1 | Tomato | nucleus | 49.69 | 45.98 |
| AT5G53980.1 | Thale cress | nucleus | 42.24 | 43.59 |
| Bra022687.1-P | Field mustard | nucleus | 40.37 | 41.67 |
| CDY28803 | Canola | nucleus | 39.75 | 41.03 |
| CDY69536 | Canola | nucleus | 39.13 | 40.38 |
| KRH26193 | Soybean | nucleus | 47.83 | 39.9 |
| KRH55168 | Soybean | nucleus | 47.83 | 38.5 |
| PGSC0003DMT400054818 | Potato | nucleus | 49.07 | 37.26 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 31.68 | 23.18 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 31.68 | 20.99 |
| VIT_02s0025g02590.t01 | Wine grape | nucleus | 24.22 | 20.31 |
| VIT_14s0066g01440.t01 | Wine grape | nucleus | 33.54 | 19.78 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 27.33 | 19.56 |
| VIT_17s0000g05630.t01 | Wine grape | nucleus | 35.4 | 17.98 |
| VIT_18s0001g06430.t01 | Wine grape | nucleus | 31.68 | 17.77 |
| VIT_14s0108g00390.t01 | Wine grape | nucleus | 31.06 | 17.67 |
| VIT_01s0026g01950.t01 | Wine grape | nucleus | 30.43 | 17.19 |
| VIT_01s0026g01550.t01 | Wine grape | nucleus | 32.92 | 16.51 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 29.81 | 14.33 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100258893 | wikigene:100258893 | MapMan:15.5.3.1 | ProteinID:CCB46309 | ProteinID:CCB46309.1 |
| ncoils:Coil | UniProt:F6H213 | EMBL:FN595229 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009637 |
| GO:GO:0009646 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | EntrezGene:LOC100258893 | wikigene:LOC100258893 | PFAM:PF00046 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF257 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI00019857D2 | ArrayExpress:VIT_19s0014g02110 | EnsemblPlantsGene:VIT_19s0014g02110 | EnsemblPlants:VIT_19s0014g02110.t01 | RefSeq:XP_002282682 | RefSeq:XP_002282682.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:2271567..2272052
Molecular Weight (calculated)
18832.4 Da
IEP (calculated)
7.835
GRAVY (calculated)
-0.758
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAFHSQHQK HKKRLTQDQV RLLETSFDHG KKLEPERKLH LARELGVPPR QVAIWYQNKR ARWKTQNLEL DYNVIRVRLE HALIEKRRLE RDVIRLQGEL
101: EKAHEMLHAL NYANPNPPPI VSTVLSSISC DEGGSTLENN EEFQFENLYA SLMGVDGSNW V
101: EKAHEMLHAL NYANPNPPPI VSTVLSSISC DEGGSTLENN EEFQFENLYA SLMGVDGSNW V
001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
Arabidopsis Description
ATHB-52Homeobox-leucine zipper protein ATHB-52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.