Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26193 | Soybean | nucleus | 85.0 | 88.08 |
| VIT_19s0014g02110.t01 | Wine grape | nucleus | 38.5 | 47.83 |
| AT5G53980.1 | Thale cress | nucleus | 35.5 | 45.51 |
| CDY28803 | Canola | nucleus | 34.5 | 44.23 |
| Bra022687.1-P | Field mustard | nucleus | 34.0 | 43.59 |
| CDY69536 | Canola | nucleus | 33.5 | 42.95 |
| PGSC0003DMT400032390 | Potato | nucleus | 34.5 | 38.98 |
| Solyc07g062790.1.1 | Tomato | nucleus | 33.5 | 38.51 |
| PGSC0003DMT400054818 | Potato | nucleus | 37.5 | 35.38 |
| KRG96107 | Soybean | nucleus | 24.5 | 22.9 |
| KRH67812 | Soybean | nucleus | 26.0 | 22.32 |
| KRG93337 | Soybean | nucleus | 28.5 | 21.35 |
| KRH47840 | Soybean | nucleus | 25.0 | 21.01 |
| KRH20007 | Soybean | nucleus | 22.5 | 20.36 |
| KRH06407 | Soybean | nucleus | 24.5 | 20.0 |
| KRH32628 | Soybean | nucleus | 22.0 | 19.56 |
| KRH45836 | Soybean | nucleus | 31.0 | 19.38 |
| KRH20316 | Soybean | nucleus | 27.5 | 19.3 |
| KRH01157 | Soybean | nucleus | 25.5 | 19.03 |
| KRG99129 | Soybean | nucleus | 26.5 | 19.0 |
| KRH40114 | Soybean | nucleus | 25.5 | 18.89 |
| KRH45876 | Soybean | nucleus | 26.0 | 18.57 |
| KRH64347 | Soybean | nucleus | 22.5 | 18.37 |
| KRH59287 | Soybean | nucleus | 28.0 | 18.24 |
| KRH74821 | Soybean | nucleus | 26.5 | 18.21 |
| KRH69308 | Soybean | nucleus | 26.5 | 17.97 |
| KRH18490 | Soybean | nucleus | 26.0 | 17.87 |
| KRG93515 | Soybean | nucleus | 26.0 | 17.81 |
| KRH69374 | Soybean | nucleus | 30.5 | 17.68 |
| KRH43132 | Soybean | nucleus | 27.5 | 17.63 |
| KRH53589 | Soybean | nucleus | 22.0 | 17.53 |
| KRH54501 | Soybean | nucleus, plastid | 28.5 | 17.48 |
| KRH74760 | Soybean | nucleus | 30.0 | 17.39 |
| KRG97544 | Soybean | nucleus | 28.0 | 17.39 |
| KRG99178 | Soybean | nucleus | 28.0 | 17.28 |
| KRH31331 | Soybean | nucleus | 27.0 | 17.2 |
| KRH03417 | Soybean | nucleus, plastid | 27.5 | 16.72 |
| KRH56963 | Soybean | nucleus, plastid | 27.0 | 16.31 |
| KRG99070 | Soybean | nucleus | 12.5 | 14.53 |
| KRH63409 | Soybean | nucleus, plastid | 18.0 | 13.53 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100781030 | MapMan:15.5.3.1 | EMBL:ACUP02003918 | ncoils:Coil | EnsemblPlantsGene:GLYMA_06G234700 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| UniProt:I1KDP7 | InterPro:IPR001356 | EnsemblPlants:KRH55168 | ProteinID:KRH55168 | ProteinID:KRH55168.1 | PFAM:PF00046 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF257 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI0002339BB6 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:37726049..37727135
Molecular Weight (calculated)
22961.0 Da
IEP (calculated)
7.232
GRAVY (calculated)
-0.836
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDFIFSFKT QQQEHHAHHQ RAKHNNNKKR LTEDQVAILE KCFSSNMKLE PEQKFHLANQ LGLPPRQVAI WYQNKRARWK TQSLEVDHGV LQARLENVVA
101: EKKQLEKDVE RLKAELKKAQ EMLLITNSVK GGDHNNNNAC EFSTSFEEGG SSGVVLDDAT YHHHHECWQS GGEVMQVEEL YAYFVGANYG TGLHEKGHKI
101: EKKQLEKDVE RLKAELKKAQ EMLLITNSVK GGDHNNNNAC EFSTSFEEGG SSGVVLDDAT YHHHHECWQS GGEVMQVEEL YAYFVGANYG TGLHEKGHKI
001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
Arabidopsis Description
ATHB-52Homeobox-leucine zipper protein ATHB-52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.