CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54501	Soybean	nucleus, plastid	89.47	73.01
KRH56963	Soybean	nucleus, plastid	69.17	55.59
KRH03417	Soybean	nucleus, plastid	66.92	54.1
VIT_17s0000g05630.t01	Wine grape	nucleus	62.78	52.68
KRH74760	Soybean	nucleus	48.12	37.1
PGSC0003DMT400065207	Potato	nucleus	44.36	36.09
KRH69374	Soybean	nucleus	46.62	35.94
Solyc03g113270.2.1	Tomato	nucleus, plastid	43.61	35.91
KRH45836	Soybean	nucleus	41.73	34.69
KRG99178	Soybean	nucleus	40.6	33.33
KRG93337	Soybean	nucleus	27.82	27.72
KRH20316	Soybean	nucleus	29.32	27.37
GSMUA_Achr7P09730_001	Banana	nucleus	28.57	25.33
KRH01157	Soybean	nucleus	22.93	22.76
KRH40114	Soybean	nucleus	22.93	22.59
KRH59287	Soybean	nucleus	25.94	22.48
KRH43132	Soybean	nucleus	26.32	22.44
KRG93515	Soybean	nucleus	24.06	21.92
KRG99129	Soybean	nucleus	22.93	21.86
KRH45876	Soybean	nucleus	22.93	21.79
KRG97544	Soybean	nucleus	26.32	21.74
KRH69308	Soybean	nucleus	24.06	21.69
KRH18490	Soybean	nucleus	23.68	21.65
KRH74821	Soybean	nucleus	23.68	21.65
KRG96107	Soybean	nucleus	16.92	21.03
KRH31331	Soybean	nucleus	24.81	21.02
GSMUA_Achr10P...	Banana	nucleus	27.07	20.81
KRH20007	Soybean	nucleus	16.17	19.46
KRH67812	Soybean	nucleus	16.54	18.88
KRH32628	Soybean	nucleus	15.79	18.67
KRH55168	Soybean	nucleus	13.53	18.0
KRH26193	Soybean	nucleus	12.41	17.1
KRH47840	Soybean	nucleus	14.66	16.39
KRH53589	Soybean	nucleus	15.41	16.33
KRH06407	Soybean	nucleus	14.29	15.51
KRH64347	Soybean	nucleus	13.91	15.1
KRG99070	Soybean	nucleus	7.89	12.21

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.2	UniProt:A0A0R0K9U7	EMBL:ACUP02002683	EnsemblPlantsGene:GLYMA_04G174500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
EnsemblPlants:KRH63409	ProteinID:KRH63409	ProteinID:KRH63409.1	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF306	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00023BFE4C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:43606034..43607790

Molecular Weight (calculated)

29456.6 Da

IEP (calculated)

4.293

GRAVY (calculated)

-0.735

Length

266 amino acids

Sequence
(BLAST)

001: MAGGSVFCST SSSSNLTTTT QPPLDSLFLS ASSPFLGSRS IVSFGDVQGG KGCNDSFFSS YDEHGDHEDM DEYFHQPEKK RRLSVEQVRF LEKSFDEENK
101: LEPERKIRLA KELGLQPRQV ARLTEKVLGR KKNEGNLEQA ETNGLQEPLQ KSLADSASEG EGSKVSIGAC KQEDINSAKS DIFDSSESPH CTDGIHSALL
201: ETGDSSYVFE PDQSDVSQDE EDNLSKTLLP HFIFPKLEDV DYSDLPHGSC NFGIPEEDQA IWSWPY

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.