Factsheet for Solyc03g113270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065207	Potato	nucleus	93.19	92.05
VIT_17s0000g05630.t01	Wine grape	nucleus	48.3	49.21
Solyc05g006980.2.1	Tomato	nucleus	42.11	47.22
KRH54501	Soybean	nucleus, plastid	46.44	46.01
KRH56963	Soybean	nucleus, plastid	46.44	45.32
KRH03417	Soybean	nucleus, plastid	45.51	44.68
Solyc04g005800.2.1	Tomato	nucleus	40.56	44.11
KRH63409	Soybean	nucleus, plastid	35.91	43.61
GSMUA_Achr7P09730_001	Banana	nucleus	34.06	36.67
Solyc02g086930.2.1	Tomato	nucleus	31.58	35.79
Solyc08g083130.2.1	Tomato	extracellular, nucleus	21.36	35.2
Solyc02g077590.1.1	Tomato	nucleus	17.34	31.28
GSMUA_Achr10P...	Banana	nucleus	33.44	31.21
Solyc07g062790.1.1	Tomato	nucleus	16.41	30.46
Solyc01g010600.2.1	Tomato	nucleus	22.6	30.04
Solyc02g067410.1.1	Tomato	nucleus	24.46	30.04
Solyc09g008810.2.1	Tomato	nucleus	21.98	29.46
Solyc01g096320.2.1	Tomato	nucleus	21.67	29.29
Solyc05g007180.2.1	Tomato	nucleus	27.55	29.18
Solyc05g051460.2.1	Tomato	nucleus	27.55	28.43
Solyc02g087840.2.1	Tomato	nucleus	26.32	27.51
Solyc04g074700.2.1	Tomato	nucleus	25.7	26.77
Solyc11g010270.1.1	Tomato	nucleus	28.79	26.57
Solyc03g082550.2.1	Tomato	nucleus	17.03	26.32
Solyc06g053220.2.1	Tomato	nucleus	17.34	24.89

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF306	UniProt:Q43529	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc03g113270.2
EnsemblPlants:Solyc03g113270.2.1	UniParc:UPI00000A8450	EMBL:X94947	SEG:seg	:	:

Description

Homeobox [Source:UniProtKB/TrEMBL;Acc:Q43529]

Coordinates

chr3:+:63457834..63460050

Molecular Weight (calculated)

36650.0 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.897

Length

323 amino acids

Sequence
(BLAST)

001: MAPGILYGGS SNFDGVFTQK QRDVFSSSTA PKGHLGSLFA PASSSSNFLG SSSMVSFRGV NGGKRSFFDS FDQDDNEADE LGEYLHQAEK KRRLTDNQVQ
101: FLEKSFGEEN KLEPERKVQL AKELGLQPRQ IAIWFQNRRA RWKTKQLEKD YDELRNRYDT LKSNYNNLLK EKEDLRTEVF RLTGKLFIKE KGNGQLDLRD
201: EHKHSNALAK ETVVDPMSNV PALVVKHQQE DLSSAKSDVF DSESPRYTSR MHSSVVDQDD SARAFETDQS DSSQDDDENF SKNMLSTANL LGKDADDDYP
301: ATSSNLSYFG FPVEDQGFGF WTY

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.