Factsheet for Solyc02g077590.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090840.2.1
Solyc02g036430.1.1
Solyc02g081270.2.1
Solyc02g084350.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53980.1	Solyc02g084350.2.1	AT2G18060.1	21245844
AT5G53980.1	Solyc02g036430.1.1	AT3G03200.1	21245844
AT5G53980.1	Solyc02g081270.2.1	AT3G03200.1	21245844
AT5G53980.1	Solyc01g090840.2.1	AT3G60580.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081296	Potato	nucleus	95.53	95.53
VIT_10s0003g00380.t01	Wine grape	nucleus	58.1	60.82
AT5G53980.1	Thale cress	nucleus	37.43	42.95
Bra022687.1-P	Field mustard	nucleus	36.87	42.31
CDY69536	Canola	nucleus	36.31	41.67
CDY28803	Canola	nucleus	36.31	41.67
Solyc07g062790.1.1	Tomato	nucleus	37.43	38.51
Solyc01g010600.2.1	Tomato	nucleus	31.28	23.05
Solyc08g083130.2.1	Tomato	extracellular, nucleus	24.58	22.45
Solyc09g008810.2.1	Tomato	nucleus	27.93	20.75
Solyc03g082550.2.1	Tomato	nucleus	23.46	20.1
Solyc05g006980.2.1	Tomato	nucleus	30.73	19.1
Solyc02g067410.1.1	Tomato	nucleus	27.93	19.01
Solyc05g007180.2.1	Tomato	nucleus	31.28	18.36
Solyc01g096320.2.1	Tomato	nucleus	24.02	17.99
Solyc04g005800.2.1	Tomato	nucleus	29.61	17.85
Solyc02g086930.2.1	Tomato	nucleus	27.93	17.54
Solyc03g113270.2.1	Tomato	nucleus, plastid	31.28	17.34
Solyc05g051460.2.1	Tomato	nucleus	29.61	16.93
Solyc04g074700.2.1	Tomato	nucleus	28.49	16.45
Solyc06g053220.2.1	Tomato	nucleus	20.67	16.44
Solyc02g087840.2.1	Tomato	nucleus	27.93	16.18
Solyc11g010270.1.1	Tomato	nucleus	27.93	14.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4B8Y4
PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF522
SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc02g077590.1	EnsemblPlants:Solyc02g077590.1.1	UniParc:UPI0002767D08	SEG:seg

Description

No Description!

Coordinates

chr2:-:42478435..42478974

Molecular Weight (calculated)

20806.4 Da

IEP (calculated)

7.571

GRAVY (calculated)

-0.847

Length

179 amino acids

Sequence
(BLAST)

001: MDFLSCQTQK IHLKCHKKRL NQDQMRLLEI SFSSNNKLDS DRKFQLAQEL GLPPRQIAIW YQNKRARWKS QSLEVDYKTL QQRLDNALED NEKLKLEVER
101: LRKELNKNQE VLLGFNTTTT NNYSSISSSC DEVGSTSCLQ LHDQSKHNHL DKDFYACLIG DEGHFGTHDG HNFFASSLS

Best Arabidopsis Sequence Match ( AT5G53980.1 )
(BLAST)

001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV

Arabidopsis Description

ATHB-52Homeobox-leucine zipper protein ATHB-52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.