Factsheet for Solyc05g007180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065805	Potato	nucleus	98.69	98.37
VIT_01s0026g01950.t01	Wine grape	nucleus	76.72	82.11
KRG99129	Soybean	nucleus	71.8	78.49
KRH45876	Soybean	nucleus	70.49	76.79
KRH74821	Soybean	nucleus	71.48	74.91
KRH69308	Soybean	nucleus	71.15	73.56
KRG99070	Soybean	nucleus	39.02	69.19
Solyc01g010600.2.1	Tomato	nucleus	52.46	65.84
AT1G69780.1	Thale cress	nucleus	62.95	65.31
VIT_14s0108g00390.t01	Wine grape	nucleus	60.0	64.66
CDY44091	Canola	nucleus	56.39	64.66
Bra007881.1-P	Field mustard	nucleus	60.0	64.21
CDY38759	Canola	nucleus	58.36	62.68
Bra016266.1-P	Field mustard	nucleus	59.02	62.5
CDY11659	Canola	nucleus	58.69	62.15
CDY70870	Canola	nucleus	60.33	61.13
CDY23547	Canola	nucleus	56.07	61.07
GSMUA_Achr1P21620_001	Banana	nucleus	55.41	60.14
Bra003980.1-P	Field mustard	nucleus	49.51	59.92
CDY48391	Canola	nucleus	49.51	59.92
GSMUA_Achr7P11600_001	Banana	nucleus	54.1	59.78
GSMUA_Achr6P36450_001	Banana	nucleus	45.25	59.48
GSMUA_Achr2P07420_001	Banana	nucleus	55.74	58.22
GSMUA_Achr1P12270_001	Banana	nucleus	54.75	57.0
GSMUA_Achr4P00550_001	Banana	nucleus	51.15	55.71
GSMUA_Achr3P21430_001	Banana	nucleus	48.52	55.64
GSMUA_Achr10P...	Banana	nucleus	52.13	55.59
GSMUA_Achr7P20950_001	Banana	nucleus	42.3	54.66
Solyc02g067410.1.1	Tomato	nucleus	45.9	53.23
GSMUA_Achr6P10660_001	Banana	nucleus	49.18	53.0
TraesCS4B01G287600.1	Wheat	nucleus	55.08	50.76
Zm00001d027852_P001	Maize	nucleus	56.72	50.29
TraesCS4D01G286400.2	Wheat	nucleus	55.08	49.56
TraesCS4A01G016600.1	Wheat	nucleus, plastid	54.43	49.11
EER92780	Sorghum	nucleus	57.05	49.01
Zm00001d048312_P001	Maize	nucleus	54.43	48.26
Solyc02g087840.2.1	Tomato	nucleus	47.87	47.25
HORVU4Hr1G075180.3	Barley	nucleus, plastid	54.75	42.39
Os10t0404900-01	Rice	nucleus	47.54	40.85
Zm00001d014201_P001	Maize	nucleus	45.25	39.66
EER94272	Sorghum	nucleus	46.89	39.5
HORVU4Hr1G075170.1	Barley	nucleus	32.13	38.28
Zm00001d033005_P001	Maize	nucleus	43.93	36.91
Solyc05g006980.2.1	Tomato	nucleus	30.49	32.29
Solyc04g005800.2.1	Tomato	nucleus	31.15	31.99
Solyc08g083130.2.1	Tomato	extracellular, nucleus	20.33	31.63
Solyc02g077590.1.1	Tomato	nucleus	18.36	31.28
Solyc02g086930.2.1	Tomato	nucleus	29.18	31.23
Solyc07g062790.1.1	Tomato	nucleus	17.7	31.03
Solyc03g113270.2.1	Tomato	nucleus, plastid	29.18	27.55
Solyc03g082550.2.1	Tomato	nucleus	18.69	27.27
Solyc05g051460.2.1	Tomato	nucleus	27.87	27.16
Solyc01g096320.2.1	Tomato	nucleus	20.98	26.78
Solyc06g053220.2.1	Tomato	nucleus	19.67	26.67
Solyc11g010270.1.1	Tomato	nucleus	30.16	26.29
Solyc09g008810.2.1	Tomato	nucleus	20.0	25.31
Solyc04g074700.2.1	Tomato	nucleus	23.93	23.55

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009744	GO:GO:0009790	GO:GO:0009791	GO:GO:0009965
GO:GO:0009987	GO:GO:0043565	GO:GO:0048826	GO:GO:0080022	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4BWP4	InterPro:Leu_zip_homeo	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF176
SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc05g007180.2	EnsemblPlants:Solyc05g007180.2.1	UniParc:UPI0002765A99	SEG:seg

Description

No Description!

Coordinates

chr5:+:1796893..1799609

Molecular Weight (calculated)

34862.5 Da

IEP (calculated)

6.352

GRAVY (calculated)

-0.977

Length

305 amino acids

Sequence
(BLAST)

001: MAFFPTNFML QTPHNEDEHQ PSTSLNPILP SCSPQDFHGI ASFLGKRSMS FSGMDGNNGC EENHGEDDLS DDGSQAGEKK RRLNMEQVKT LEKNFELGNK
101: LEPERKMQLA RALGLQPRQI AIWFQNRRAR WKTKQLEKDY ELLKRQFDAI KAENDALQTQ NQKLHAEIMS LKNREQPTES INLNKETEGS CSNRSENSSE
201: IKLDISRTPA IDSPLSNHHP NISSRPFFPP SMIRSNNNNN NNGVVVPHQL FHINSSSSRQ DLKLMDQNTT TNNSSSVKEE SLSNMFCGID DQTSFWPWLE
301: QQHFN

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.