Factsheet for GSMUA_Achr2P07420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21620_001	Banana	nucleus	77.4	80.43
GSMUA_Achr1P12270_001	Banana	nucleus	80.14	79.86
GSMUA_Achr7P11600_001	Banana	nucleus	69.52	73.55
GSMUA_Achr6P10660_001	Banana	nucleus	69.52	71.73
GSMUA_Achr10P...	Banana	nucleus	68.15	69.58
VIT_01s0026g01950.t01	Wine grape	nucleus	60.27	61.75
KRH74821	Soybean	nucleus	57.88	58.08
KRG99129	Soybean	nucleus	55.48	58.06
KRH69308	Soybean	nucleus	58.56	57.97
GSMUA_Achr3P21430_001	Banana	nucleus	52.4	57.52
KRH45876	Soybean	nucleus	54.79	57.14
GSMUA_Achr7P20950_001	Banana	nucleus	45.55	56.36
PGSC0003DMT400002259	Potato	nucleus	45.21	56.17
PGSC0003DMT400065805	Potato	nucleus	58.56	55.88
Solyc05g007180.2.1	Tomato	nucleus	58.22	55.74
Solyc01g010600.2.1	Tomato	nucleus	45.89	55.14
VIT_14s0108g00390.t01	Wine grape	nucleus	53.42	55.12
GSMUA_Achr6P36450_001	Banana	nucleus	43.49	54.74
TraesCS4B01G287600.1	Wheat	nucleus	61.99	54.68
KRG99070	Soybean	nucleus	32.19	54.65
GSMUA_Achr4P00550_001	Banana	nucleus	51.71	53.93
CDY44091	Canola	nucleus	48.97	53.76
TraesCS4A01G016600.1	Wheat	nucleus, plastid	61.99	53.55
TraesCS4D01G286400.2	Wheat	nucleus	61.99	53.39
EER92780	Sorghum	nucleus	64.38	52.96
Zm00001d048312_P001	Maize	nucleus	62.33	52.91
Zm00001d027852_P001	Maize	nucleus	61.99	52.62
Bra007881.1-P	Field mustard	nucleus	51.03	52.28
CDY38759	Canola	nucleus	50.68	52.11
Bra016266.1-P	Field mustard	nucleus	51.37	52.08
AT1G69780.1	Thale cress	nucleus	52.4	52.04
CDY11659	Canola	nucleus	51.03	51.74
Bra003980.1-P	Field mustard	nucleus	44.18	51.19
CDY48391	Canola	nucleus	44.18	51.19
CDY23547	Canola	nucleus	48.29	50.36
CDY70870	Canola	nucleus	51.03	49.5
HORVU4Hr1G075180.3	Barley	nucleus, plastid	61.64	45.69
Os10t0404900-01	Rice	nucleus	54.79	45.07
EER94272	Sorghum	nucleus	54.11	43.65
Zm00001d014201_P001	Maize	nucleus	51.71	43.39
Zm00001d033005_P001	Maize	nucleus	51.37	41.32
HORVU4Hr1G075170.1	Barley	nucleus	33.9	38.67
GSMUA_Achr10P...	Banana	nucleus	24.32	37.37
GSMUA_Achr7P12740_001	Banana	nucleus	28.08	35.96
GSMUA_Achr6P10310_001	Banana	nucleus	24.32	34.3
GSMUA_Achr5P05300_001	Banana	nucleus	23.29	33.01
GSMUA_Achr3P06620_001	Banana	nucleus	29.45	31.39
GSMUA_Achr7P11760_001	Banana	nucleus	26.71	30.95
GSMUA_Achr10P...	Banana	nucleus	25.68	30.36
GSMUA_Achr10P...	Banana	nucleus	27.05	30.04
GSMUA_Achr9P14570_001	Banana	nucleus	25.68	28.52
GSMUA_Achr7P09730_001	Banana	nucleus	29.11	28.33
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	27.74	28.32
GSMUA_Achr8P25940_001	Banana	nucleus	25.68	26.13
GSMUA_Achr3P06190_001	Banana	nucleus	24.66	25.44
GSMUA_Achr9P14960_001	Banana	nucleus	24.32	25.27
GSMUA_Achr9P18360_001	Banana	nucleus	24.32	25.09
GSMUA_Achr1P16280_001	Banana	nucleus	18.49	24.55
GSMUA_Achr10P...	Banana	nucleus	28.08	23.7
GSMUA_Achr1P18670_001	Banana	nucleus	19.86	20.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr2G07420_001	EnsemblPlants:GSMUA_Achr2P07420_001	EnsemblPlants:GSMUA_Achr2T07420_001	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0S5Y3	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF176
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000295208C	SEG:seg	:	:

Description

Homeobox-leucine zipper protein HOX21 [Source:GMGC_GENE;Acc:GSMUA_Achr2G07420_001]

Coordinates

chr2:+:11897955..11899204

Molecular Weight (calculated)

33030.6 Da

IEP (calculated)

6.006

GRAVY (calculated)

-0.801

Length

292 amino acids

Sequence
(BLAST)

001: MSCNGMASSS SSFFSPNYVI HVQTPHEEEH QLSSAVAALL HNTPCNSLQD LRVMAPMIGK RSLSFSGVEN GDEMHADDDF SDDGMQTGEK KRRLTVEQVR
101: TLEKNFEQGN KLEPERKMQL ARALGLQPRQ VAIWFQNRRA RWKTKQLEKD YDVLKRQFEA MKSENEALRA QNQKLHAEIS ALKGREAPEL INLNKETEGS
201: CSNRSENSSE INLDISRTSV TESPLNPHQS LPFIHSIRPA DMDQLLQSSS RPEMQSPKIE TGATEGSFSN LLCGMEDQSA SFWPWSDHPN FH

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.