Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016266.1-P | Field mustard | nucleus | 91.5 | 93.4 |
| Bra007881.1-P | Field mustard | nucleus | 90.14 | 92.98 |
| CDY44091 | Canola | nucleus | 84.01 | 92.86 |
| CDY11659 | Canola | nucleus | 90.82 | 92.71 |
| CDY38759 | Canola | nucleus | 89.12 | 92.25 |
| CDY70870 | Canola | nucleus | 90.82 | 88.7 |
| CDY23547 | Canola | nucleus | 84.35 | 88.57 |
| CDY48391 | Canola | nucleus | 73.47 | 85.71 |
| Bra003980.1-P | Field mustard | nucleus | 73.47 | 85.71 |
| AT1G26960.1 | Thale cress | nucleus | 64.63 | 74.51 |
| VIT_01s0026g01950.t01 | Wine grape | nucleus | 68.37 | 70.53 |
| KRG99129 | Soybean | nucleus | 63.27 | 66.67 |
| KRH45876 | Soybean | nucleus | 62.93 | 66.07 |
| KRH74821 | Soybean | nucleus | 64.63 | 65.29 |
| KRH69308 | Soybean | nucleus | 64.97 | 64.75 |
| Solyc05g007180.2.1 | Tomato | nucleus | 65.31 | 62.95 |
| PGSC0003DMT400065805 | Potato | nucleus | 65.31 | 62.75 |
| KRG99070 | Soybean | nucleus | 33.67 | 57.56 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 43.54 | 55.17 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 43.54 | 54.24 |
| VIT_14s0108g00390.t01 | Wine grape | nucleus | 51.7 | 53.71 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 50.34 | 53.62 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 51.02 | 53.38 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 50.68 | 53.21 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 52.04 | 52.4 |
| GSMUA_Achr10P... | Banana | nucleus | 50.68 | 52.1 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 51.36 | 51.54 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 46.26 | 51.13 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 48.3 | 50.18 |
| TraesCS4B01G287600.1 | Wheat | nucleus | 54.08 | 48.04 |
| Zm00001d027852_P001 | Maize | nucleus | 55.44 | 47.38 |
| TraesCS4D01G286400.2 | Wheat | nucleus | 54.08 | 46.9 |
| TraesCS4A01G016600.1 | Wheat | nucleus, plastid | 53.4 | 46.45 |
| EER92780 | Sorghum | nucleus | 55.78 | 46.2 |
| Zm00001d048312_P001 | Maize | nucleus | 52.04 | 44.48 |
| AT3G01220.1 | Thale cress | nucleus | 41.84 | 43.01 |
| AT5G15150.1 | Thale cress | nucleus | 44.56 | 41.72 |
| HORVU4Hr1G075180.3 | Barley | nucleus, plastid | 54.08 | 40.36 |
| HORVU4Hr1G075170.1 | Barley | nucleus | 32.31 | 37.11 |
| Os10t0404900-01 | Rice | nucleus | 44.22 | 36.62 |
| Zm00001d014201_P001 | Maize | nucleus | 42.52 | 35.92 |
| EER94272 | Sorghum | nucleus | 44.22 | 35.91 |
| Zm00001d033005_P001 | Maize | nucleus | 41.84 | 33.88 |
| AT3G01470.1 | Thale cress | nucleus | 30.61 | 33.09 |
| AT2G36610.1 | Thale cress | nucleus | 19.05 | 30.27 |
| AT5G53980.1 | Thale cress | nucleus | 15.65 | 29.49 |
| AT5G65310.1 | Thale cress | nucleus | 29.93 | 28.21 |
| AT4G40060.1 | Thale cress | nucleus | 27.89 | 27.89 |
| AT2G22430.1 | Thale cress | nucleus | 28.91 | 27.33 |
| AT3G61890.1 | Thale cress | nucleus | 20.41 | 25.53 |
| AT5G03790.1 | Thale cress | nucleus | 19.39 | 24.26 |
| AT2G46680.1 | Thale cress | nucleus | 20.41 | 23.26 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:843314 | ProteinID:AAG52541.1 | ProteinID:AEE34974.1 | EMBL:AF208044 |
| ArrayExpress:AT1G69780 | EnsemblPlantsGene:AT1G69780 | RefSeq:AT1G69780 | TAIR:AT1G69780 | RefSeq:AT1G69780-TAIR-G | EnsemblPlants:AT1G69780.1 |
| TAIR:AT1G69780.1 | Symbol:ATHB13 | EMBL:AY057572 | EMBL:AY086888 | EMBL:AY133645 | ncoils:Coil |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 |
| GO:GO:0009744 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0048826 | GO:GO:0080022 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | RefSeq:NP_177136.1 | PFAM:PF00046 | PFAM:PF02183 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF176 | UniProt:Q8LC03 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI00000A8B7D | SEG:seg | : | : | : |
Description
ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
Coordinates
chr1:+:26258788..26260781
Molecular Weight (calculated)
33343.8 Da
IEP (calculated)
5.400
GRAVY (calculated)
-0.946
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.