Factsheet for GSMUA_Achr6P36450_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P20950_001	Banana	nucleus	59.05	58.05
GSMUA_Achr4P00550_001	Banana	nucleus	68.97	57.14
VIT_01s0026g01950.t01	Wine grape	nucleus	61.21	49.82
KRG99129	Soybean	nucleus	59.48	49.46
KRH45876	Soybean	nucleus	59.05	48.93
KRH74821	Soybean	nucleus	60.34	48.11
KRH69308	Soybean	nucleus	60.78	47.8
KRG99070	Soybean	nucleus	35.34	47.67
PGSC0003DMT400002259	Potato	nucleus	47.41	46.81
VIT_14s0108g00390.t01	Wine grape	nucleus	56.9	46.64
GSMUA_Achr1P21620_001	Banana	nucleus	55.6	45.91
GSMUA_Achr7P11600_001	Banana	nucleus	53.88	45.29
Solyc05g007180.2.1	Tomato	nucleus	59.48	45.25
PGSC0003DMT400065805	Potato	nucleus	59.48	45.1
GSMUA_Achr1P12270_001	Banana	nucleus	56.9	45.05
Solyc01g010600.2.1	Tomato	nucleus	46.55	44.44
GSMUA_Achr3P21430_001	Banana	nucleus	50.86	44.36
CDY44091	Canola	nucleus	50.0	43.61
AT1G69780.1	Thale cress	nucleus	55.17	43.54
GSMUA_Achr2P07420_001	Banana	nucleus	54.74	43.49
GSMUA_Achr6P10660_001	Banana	nucleus	53.02	43.46
GSMUA_Achr10P...	Banana	nucleus	53.02	43.01
CDY23547	Canola	nucleus	51.72	42.86
Bra007881.1-P	Field mustard	nucleus	52.59	42.81
Bra003980.1-P	Field mustard	nucleus	46.12	42.46
CDY48391	Canola	nucleus	46.12	42.46
CDY38759	Canola	nucleus	51.72	42.25
Bra016266.1-P	Field mustard	nucleus	51.72	41.67
CDY11659	Canola	nucleus	51.29	41.32
CDY70870	Canola	nucleus	52.59	40.53
TraesCS4B01G287600.1	Wheat	nucleus	51.72	36.25
TraesCS4A01G016600.1	Wheat	nucleus, plastid	51.72	35.5
TraesCS4D01G286400.2	Wheat	nucleus	51.72	35.4
Zm00001d027852_P001	Maize	nucleus	51.72	34.88
Zm00001d048312_P001	Maize	nucleus	50.86	34.3
EER92780	Sorghum	nucleus	51.72	33.8
GSMUA_Achr10P...	Banana	nucleus	25.86	31.58
GSMUA_Achr5P05300_001	Banana	nucleus	28.02	31.55
HORVU4Hr1G075170.1	Barley	nucleus	33.62	30.47
HORVU4Hr1G075180.3	Barley	nucleus, plastid	51.72	30.46
GSMUA_Achr7P12740_001	Banana	nucleus	29.74	30.26
Os10t0404900-01	Rice	nucleus	46.12	30.14
GSMUA_Achr6P10310_001	Banana	nucleus	26.29	29.47
Zm00001d014201_P001	Maize	nucleus	43.97	29.31
EER94272	Sorghum	nucleus	45.69	29.28
GSMUA_Achr10P...	Banana	nucleus	32.33	28.52
Zm00001d033005_P001	Maize	nucleus	42.67	27.27
GSMUA_Achr3P06620_001	Banana	nucleus	31.47	26.64
GSMUA_Achr9P14570_001	Banana	nucleus	30.17	26.62
GSMUA_Achr10P...	Banana	nucleus	28.02	26.32
GSMUA_Achr3P06190_001	Banana	nucleus	31.47	25.8
GSMUA_Achr7P11760_001	Banana	nucleus	28.02	25.79
GSMUA_Achr9P18360_001	Banana	nucleus	31.03	25.44
GSMUA_Achr8P25940_001	Banana	nucleus	31.03	25.09
GSMUA_Achr7P09730_001	Banana	nucleus	31.9	24.67
GSMUA_Achr1P16280_001	Banana	nucleus	23.28	24.55
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	29.74	24.13
GSMUA_Achr9P14960_001	Banana	nucleus	27.16	22.42
GSMUA_Achr10P...	Banana	nucleus	28.88	19.36
GSMUA_Achr1P18670_001	Banana	nucleus	23.28	18.62

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G36450_001	EnsemblPlants:GSMUA_Achr6P36450_001	EnsemblPlants:GSMUA_Achr6T36450_001	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0TD87	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF176
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000295D0BF	SEG:seg	:	:

Description

Homeobox-leucine zipper protein ATHB-13 [Source:GMGC_GENE;Acc:GSMUA_Achr6G36450_001]

Coordinates

chr6:-:34427414..34428203

Molecular Weight (calculated)

26907.5 Da

IEP (calculated)

6.407

GRAVY (calculated)

-0.995

Length

232 amino acids

Sequence
(BLAST)

001: MDAGRRSTSF SGMETCEELN LEDDISDDGL QPPGEKKKRL NLEQVRTLEK SFVMGKKLEP ERKMELARSL GLQPRQIAIW FQNRRARWKI KQLEKDYDEL
101: KRQFEMMKAQ NDALHAHNKE LLSQILSLKG KDVSESINLN KETEGSCSMR SENSPDISLE ISREPMNHNP SDLHQQSRTF FPSASQLLHS SSKSETPKVE
201: SSVQRDNLCN MFYSTDDQSA FWAWSEQHNF HQ

Best Arabidopsis Sequence Match ( AT3G01220.1 )
(BLAST)

001: MYVFDPTTEA GLRLEMAFPQ HGFMFQQLHE DNSQDQLPSC PPHLFNGGGN YMMNRSMSLM NVQEDHNQTL DEENLSDDGA HTMLGEKKKR LQLEQVKALE
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN

Arabidopsis Description

ATHB-20Homeobox-leucine zipper protein ATHB-20 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAT0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.