Factsheet for Bra007881.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44091	Canola	nucleus	90.18	96.62
CDY70870	Canola	nucleus	97.89	92.69
AT1G69780.1	Thale cress	nucleus	92.98	90.14
Bra016266.1-P	Field mustard	nucleus	89.82	88.89
Bra003980.1-P	Field mustard	nucleus	70.88	80.16
Bra016300.1-P	Field mustard	nucleus	65.26	73.23
VIT_01s0026g01950.t01	Wine grape	nucleus	67.37	67.37
KRG99129	Soybean	nucleus	62.46	63.8
KRH45876	Soybean	nucleus	62.11	63.21
KRH74821	Soybean	nucleus	63.86	62.54
KRH69308	Soybean	nucleus	64.21	62.03
Solyc05g007180.2.1	Tomato	nucleus	64.21	60.0
PGSC0003DMT400065805	Potato	nucleus	64.21	59.8
KRG99070	Soybean	nucleus	33.68	55.81
GSMUA_Achr7P11600_001	Banana	nucleus	51.93	53.62
GSMUA_Achr6P36450_001	Banana	nucleus	42.81	52.59
GSMUA_Achr7P20950_001	Banana	nucleus	43.51	52.54
GSMUA_Achr4P00550_001	Banana	nucleus	51.58	52.5
GSMUA_Achr1P21620_001	Banana	nucleus	51.58	52.31
GSMUA_Achr10P...	Banana	nucleus	51.93	51.75
VIT_14s0108g00390.t01	Wine grape	nucleus	51.23	51.59
GSMUA_Achr2P07420_001	Banana	nucleus	52.28	51.03
GSMUA_Achr1P12270_001	Banana	nucleus	52.28	50.85
GSMUA_Achr3P21430_001	Banana	nucleus	47.02	50.38
GSMUA_Achr6P10660_001	Banana	nucleus	49.47	49.82
Bra039135.1-P	Field mustard	nucleus	44.56	46.69
Zm00001d027852_P001	Maize	nucleus	55.44	45.93
TraesCS4B01G287600.1	Wheat	nucleus	52.98	45.62
TraesCS4D01G286400.2	Wheat	nucleus	52.98	44.54
EER92780	Sorghum	nucleus	55.44	44.51
TraesCS4A01G016600.1	Wheat	nucleus, plastid	52.28	44.08
Bra006285.1-P	Field mustard	nucleus	43.51	43.82
Zm00001d048312_P001	Maize	nucleus	52.28	43.31
Bra023506.1-P	Field mustard	nucleus	43.86	43.25
Bra008717.1-P	Field mustard	nucleus	42.81	42.36
HORVU4Hr1G075180.3	Barley	nucleus, plastid	52.98	38.32
Bra028454.1-P	Field mustard	nucleus	22.81	36.52
HORVU4Hr1G075170.1	Barley	nucleus	32.28	35.94
Os10t0404900-01	Rice	nucleus	44.56	35.77
Zm00001d014201_P001	Maize	nucleus	42.81	35.06
EER94272	Sorghum	nucleus	44.21	34.81
Zm00001d033005_P001	Maize	nucleus	41.4	32.51
Bra022687.1-P	Field mustard	nucleus	16.14	29.49
Bra005259.1-P	Field mustard	nucleus	19.3	29.41
Bra039116.1-P	Field mustard	nucleus	26.67	29.23
Bra040519.1-P	Field mustard	nucleus	27.37	28.47
Bra024377.1-P	Field mustard	nucleus	30.18	28.2
Bra031866.1-P	Field mustard	nucleus	30.53	28.06
Bra030238.1-P	Field mustard	nucleus	28.77	27.61
Bra011808.1-P	Field mustard	nucleus	28.42	27.46
Bra038523.1-P	Field mustard	nucleus	29.47	27.01
Bra010642.1-P	Field mustard	nucleus	26.32	26.22
Bra028820.1-P	Field mustard	nucleus	20.7	25.99
Bra014417.1-P	Field mustard	nucleus	19.65	24.56
Bra007637.1-P	Field mustard	nucleus	19.65	24.35
Bra009510.1-P	Field mustard	nucleus	19.65	24.35
Bra039265.1-P	Field mustard	nucleus	18.25	22.71
Bra004516.1-P	Field mustard	nucleus	20.0	22.44

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra007881	EnsemblPlants:Bra007881.1	EnsemblPlants:Bra007881.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4CUI6	PFAM:PF00046	PFAM:PF02183
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF176	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI0002546878	SEG:seg	:	:	:	:

Description

AT1G69780 (E=4e-130) ATHB13 | ATHB13; DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA02:+:11544541..11546210

Molecular Weight (calculated)

32394.9 Da

IEP (calculated)

5.715

GRAVY (calculated)

-0.837

Length

285 amino acids

Sequence
(BLAST)

001: MSCNNGMSFF PSNFMIQPSY EDLPPSLSPL LPSCSIPQDL HGFASFLGKR SPVEGLEAGN IMNGEEDYSD DGSQKGEKKR RLNMEQVKTL EKNFELGNKL
101: DPERKMQLAR ALCLQPRQIA IWFQNRRARW KTKQLEKDYD TLKRQFDSLK AENDLLQTHN QKLQAEIMSL RNREQTESIN LNKETEGSCS NRSDNSSDNF
201: RLDISTAVPS VDSTITGGHP PAQQTVGRHF FPPATATTTT TTMQFFQNSS SGQSMVKEEN SISNMFCAMD DHSGFWPWLD QQQYN

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.