Factsheet for Bra028454.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67451	Canola	nucleus	98.31	98.31
Bra022687.1-P	Field mustard	nucleus	28.65	32.69
Bra039116.1-P	Field mustard	nucleus	38.76	26.54
Bra006285.1-P	Field mustard	nucleus	41.01	25.8
Bra039135.1-P	Field mustard	nucleus	38.76	25.37
Bra008717.1-P	Field mustard	nucleus	41.01	25.35
Bra023506.1-P	Field mustard	nucleus	41.01	25.26
Bra040519.1-P	Field mustard	nucleus	38.76	25.18
Bra005259.1-P	Field mustard	nucleus	25.84	24.6
Bra030238.1-P	Field mustard	nucleus	41.01	24.58
Bra010642.1-P	Field mustard	nucleus	39.33	24.48
Bra014417.1-P	Field mustard	nucleus	30.9	24.12
Bra011808.1-P	Field mustard	nucleus	39.89	24.07
Bra016300.1-P	Field mustard	nucleus	34.27	24.02
Bra038523.1-P	Field mustard	nucleus	41.57	23.79
Bra003980.1-P	Field mustard	nucleus	33.15	23.41
Bra009510.1-P	Field mustard	nucleus	29.78	23.04
Bra007637.1-P	Field mustard	nucleus	29.78	23.04
Bra016266.1-P	Field mustard	nucleus	37.08	22.92
Bra007881.1-P	Field mustard	nucleus	36.52	22.81
Bra028820.1-P	Field mustard	nucleus	28.65	22.47
Bra004516.1-P	Field mustard	nucleus	32.02	22.44
Bra031866.1-P	Field mustard	nucleus	37.64	21.61
Bra024377.1-P	Field mustard	nucleus	35.96	20.98
Bra039265.1-P	Field mustard	nucleus	26.4	20.52
Os03t0170600-01	Rice	cytosol, nucleus	5.06	12.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra028454	EnsemblPlants:Bra028454.1	EnsemblPlants:Bra028454.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4EI39	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF136	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI00025432B8	:	:	:	:

Description

AT3G01470 (E=7e-035) ATHB-1, ATHB1, HD-ZIP-1, HAT5 | ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor

Coordinates

chrA02:-:416956..417656

Molecular Weight (calculated)

20623.4 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.879

Length

178 amino acids

Sequence
(BLAST)

001: MDPNYDQESR SRSAPTGEID SQPAEKKRRL TIEQVNMLEK SFEEENKLEP ERKTELAKML GLPQRQVAVW FQNRKARCKN KKIERDYDVL KACYDSLLAK
101: HESVISENEK LKSKVFTLTE MLLPAAHQTQ RNLQGKLNSK GDDETMSSST ALVPLANDHY FTNVDESFGW WVWPSNLM

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.