Factsheet for Bra011808.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75697	Canola	nucleus	100.0	100.0
CDX69357	Canola	nucleus	97.97	97.97
AT4G40060.1	Thale cress	nucleus	85.76	86.05
Bra010642.1-P	Field mustard	nucleus	80.68	83.22
Bra030238.1-P	Field mustard	nucleus	71.86	71.38
Bra038523.1-P	Field mustard	nucleus	72.54	68.81
KRH59287	Soybean	nucleus	49.15	47.23
KRH43132	Soybean	nucleus	49.15	46.47
KRH31331	Soybean	nucleus	49.15	46.18
KRG97544	Soybean	nucleus	49.83	45.65
Solyc05g051460.2.1	Tomato	nucleus	47.12	44.41
VIT_07s0191g00180.t01	Wine grape	nucleus	48.81	42.99
PGSC0003DMT400043251	Potato	nucleus	47.12	42.77
Bra024377.1-P	Field mustard	nucleus	44.07	42.62
Bra031866.1-P	Field mustard	nucleus	44.75	42.58
PGSC0003DMT400041655	Potato	nucleus	48.81	41.38
Solyc11g010270.1.1	Tomato	nucleus	48.47	40.86
Bra028454.1-P	Field mustard	nucleus	24.07	39.89
Bra039116.1-P	Field mustard	nucleus	28.81	32.69
Bra022687.1-P	Field mustard	nucleus	16.95	32.05
Bra040519.1-P	Field mustard	nucleus	29.49	31.75
Bra005259.1-P	Field mustard	nucleus	19.32	30.48
Bra039135.1-P	Field mustard	nucleus	27.8	30.15
Bra003980.1-P	Field mustard	nucleus	25.42	29.76
Bra016300.1-P	Field mustard	nucleus	24.75	28.74
Bra006285.1-P	Field mustard	nucleus	27.46	28.62
Bra007881.1-P	Field mustard	nucleus	27.46	28.42
Bra008717.1-P	Field mustard	nucleus	27.46	28.12
Bra016266.1-P	Field mustard	nucleus	27.46	28.12
Bra023506.1-P	Field mustard	nucleus	27.46	28.03
Bra007637.1-P	Field mustard	nucleus	20.68	26.52
Bra039265.1-P	Field mustard	nucleus	20.34	26.2
Bra014417.1-P	Field mustard	nucleus	19.32	25.0
Bra004516.1-P	Field mustard	nucleus	21.36	24.8
Bra028820.1-P	Field mustard	nucleus	18.98	24.67
Bra009510.1-P	Field mustard	nucleus	18.31	23.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra011808	EnsemblPlants:Bra011808.1	EnsemblPlants:Bra011808.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4D5Q1	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF196
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002546242	SEG:seg	:	:

Description

AT4G40060 (E=1e-129) ATHB16, ATHB-16 | ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); sequence-specific DNA binding / transcription activator/ transcription factor

Coordinates

chrA01:-:420773..421900

Molecular Weight (calculated)

33434.4 Da

IEP (calculated)

4.645

GRAVY (calculated)

-0.983

Length

295 amino acids

Sequence
(BLAST)

001: MMKRLSSSDS MCGLVSNSPD EQSPRGYGSN FQSMLDGYEE DGTIVEEYSG NHHHMGLSEK KRRLRVDQVK ALEKNFELEN KLEPERKTKL AQELGLQPRQ
101: VAVWFQNRRA RWKTKQLEKD YGLLKSQYDS LRHNFDSLRR DNDSLLQEIS KMKGKINGED EDNNNVKATT ESDISAVKEE EDPMPSSPPQ FLEHSTGFNY
201: RRSFTDLRDL MPNPVVEAGS SDSCDSSAVL NEETSSENGR LTPPPPATVA GGSFLQFVKT EDHDEFFSGE EACGGFFSDE QPPSLNWYSA SDHWT

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.