Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g051460.2.1 | Tomato | nucleus | 89.85 | 93.29 |
| PGSC0003DMT400041655 | Potato | nucleus | 68.92 | 64.37 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 60.31 | 58.51 |
| KRH43132 | Soybean | nucleus | 56.0 | 58.33 |
| CDY48942 | Canola | nucleus | 28.92 | 58.02 |
| KRH59287 | Soybean | nucleus | 53.54 | 56.68 |
| KRH31331 | Soybean | nucleus | 51.69 | 53.5 |
| KRG97544 | Soybean | nucleus | 52.92 | 53.42 |
| CDY39476 | Canola | nucleus | 41.54 | 47.87 |
| CDX89467 | Canola | nucleus | 43.69 | 47.33 |
| AT2G22430.1 | Thale cress | nucleus | 45.23 | 47.27 |
| CDY25597 | Canola | nucleus | 43.38 | 47.16 |
| Bra030238.1-P | Field mustard | nucleus | 43.08 | 47.14 |
| CDX75697 | Canola | nucleus | 42.77 | 47.12 |
| Bra011808.1-P | Field mustard | nucleus | 42.77 | 47.12 |
| CDY25596 | Canola | nucleus | 38.46 | 46.99 |
| AT5G65310.1 | Thale cress | nucleus | 44.92 | 46.79 |
| CDX69357 | Canola | nucleus | 42.46 | 46.78 |
| AT4G40060.1 | Thale cress | nucleus | 42.15 | 46.6 |
| CDY69618 | Canola | nucleus | 43.69 | 46.56 |
| CDX90376 | Canola | nucleus | 40.62 | 46.32 |
| Bra024377.1-P | Field mustard | nucleus | 43.38 | 46.23 |
| CDY67332 | Canola | nucleus | 43.38 | 46.23 |
| CDY33967 | Canola | nucleus | 44.0 | 46.13 |
| Bra010642.1-P | Field mustard | nucleus | 40.31 | 45.8 |
| Bra031866.1-P | Field mustard | nucleus | 43.38 | 45.48 |
| Bra038523.1-P | Field mustard | nucleus | 43.38 | 45.34 |
| CDY13761 | Canola | nucleus | 43.38 | 45.34 |
| CDX76923 | Canola | nucleus | 43.08 | 45.16 |
| CDY37819 | Canola | nucleus | 43.08 | 45.16 |
| CDX99719 | Canola | nucleus | 26.15 | 43.59 |
| PGSC0003DMT400079230 | Potato | nucleus | 31.38 | 34.93 |
| PGSC0003DMT400003586 | Potato | nucleus | 23.69 | 32.22 |
| PGSC0003DMT400007376 | Potato | nucleus | 29.23 | 32.09 |
| PGSC0003DMT400002259 | Potato | nucleus | 23.08 | 31.91 |
| PGSC0003DMT400081296 | Potato | nucleus | 17.54 | 31.84 |
| PGSC0003DMT400017751 | Potato | nucleus | 21.85 | 31.56 |
| PGSC0003DMT400045471 | Potato | nucleus | 28.31 | 30.56 |
| PGSC0003DMT400001322 | Potato | nucleus | 26.77 | 30.53 |
| PGSC0003DMT400006949 | Potato | nucleus | 22.15 | 29.63 |
| PGSC0003DMT400065805 | Potato | nucleus | 26.77 | 28.43 |
| PGSC0003DMT400032390 | Potato | nucleus | 15.08 | 27.68 |
| PGSC0003DMT400013968 | Potato | nucleus | 18.77 | 27.11 |
| PGSC0003DMT400047622 | Potato | nucleus | 17.54 | 26.64 |
| PGSC0003DMT400065207 | Potato | nucleus | 26.46 | 26.3 |
| PGSC0003DMT400000694 | Potato | nucleus | 20.0 | 25.79 |
| PGSC0003DMT400054818 | Potato | nucleus | 16.31 | 25.0 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102592561 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | UniProt:M1BEC0 | PFAM:PF00046 | PFAM:PF02183 | EnsemblPlantsGene:PGSC0003DMG400016790 |
| PGSC:PGSC0003DMG400016790 | EnsemblPlants:PGSC0003DMT400043251 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF196 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002969A1B | RefSeq:XP_006366219.1 | SEG:seg |
Description
Homeodomain-leucine zipper protein 56 [Source:PGSC_GENE;Acc:PGSC0003DMG400016790]
Coordinates
chr5:+:46286548..46289427
Molecular Weight (calculated)
36692.8 Da
IEP (calculated)
4.395
GRAVY (calculated)
-0.846
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRVRSNDSL GAPLTSICQN TTDEHNNWNN HVYSRDFQSM LEGLDDDEAT TCVEESGVGS EKKRRLRVDQ VKALEKNFEV DNKLDPERKM KLAQELGLQP
101: RQVAIWFQNR RARWKTKQLE RDYNVLKANF DSLKHNYESI QHDNEALLKE INELKSKLQG GNNEIKIAVK EEAFESESDD KETEQSNQCN NSNTELNFDT
201: IIMNPSIIFT DFKDGSSDSD SSAILNEDNA VISSSEAFLI KSGSGSGSGS GSGSSSPDSN SSLNCFQFLE SNPKSILTNE VDFSSSQFVK LEEHNFFSGE
301: ESCSTLLFTD EQAPTLHWYC SEDWN
101: RQVAIWFQNR RARWKTKQLE RDYNVLKANF DSLKHNYESI QHDNEALLKE INELKSKLQG GNNEIKIAVK EEAFESESDD KETEQSNQCN NSNTELNFDT
201: IIMNPSIIFT DFKDGSSDSD SSAILNEDNA VISSSEAFLI KSGSGSGSGS GSGSSSPDSN SSLNCFQFLE SNPKSILTNE VDFSSSQFVK LEEHNFFSGE
301: ESCSTLLFTD EQAPTLHWYC SEDWN
001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
Arabidopsis Description
ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.