Factsheet for PGSC0003DMT400007376

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005800.2.1	Tomato	nucleus	90.54	90.24
PGSC0003DMT400045471	Potato	nucleus	59.46	58.47
VIT_01s0026g01550.t01	Wine grape	nucleus	50.68	46.73
KRH45836	Soybean	nucleus	48.31	44.69
KRH74760	Soybean	nucleus	51.69	44.35
KRH69374	Soybean	nucleus	50.34	43.19
KRG99178	Soybean	nucleus	45.95	41.98
PGSC0003DMT400065207	Potato	nucleus	45.61	41.28
PGSC0003DMT400001322	Potato	nucleus	34.8	36.14
PGSC0003DMT400017751	Potato	nucleus	27.03	35.56
PGSC0003DMT400002259	Potato	nucleus	27.36	34.47
PGSC0003DMT400003586	Potato	nucleus	26.35	32.64
PGSC0003DMT400081296	Potato	nucleus	18.92	31.28
PGSC0003DMT400065805	Potato	nucleus	31.76	30.72
PGSC0003DMT400043251	Potato	nucleus	32.09	29.23
PGSC0003DMT400000694	Potato	nucleus	23.31	27.38
PGSC0003DMT400013968	Potato	nucleus	20.61	27.11
PGSC0003DMT400041655	Potato	nucleus	31.76	27.01
PGSC0003DMT400006949	Potato	nucleus	21.96	26.75
PGSC0003DMT400047622	Potato	nucleus	19.26	26.64
PGSC0003DMT400032390	Potato	nucleus	15.54	25.99
PGSC0003DMT400054818	Potato	nucleus	18.24	25.47
PGSC0003DMT400079230	Potato	nucleus	25.0	25.34

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102598460	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0ZSV7	PFAM:PF00046	PFAM:PF02183	EnsemblPlantsGene:PGSC0003DMG400002835
PGSC:PGSC0003DMG400002835	EnsemblPlants:PGSC0003DMT400007376	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF306	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002956600	RefSeq:XP_006344287.1	SEG:seg

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002835]

Coordinates

chr4:+:404797..407308

Molecular Weight (calculated)

34284.7 Da

IEP (calculated)

4.860

GRAVY (calculated)

-0.884

Length

296 amino acids

Sequence
(BLAST)

001: MEVARVYEGS NNCFIPPNEI LPPTSNWVSN SSSIFHGSVS MVNFDQDQVQ KSKMRSFLVQ LDQDDNNSND DNYNYHQSEK KRRLLPKQVE FLEKSFEVEN
101: KLEPERKVQL AKETGLQPRQ VAIWFQNRRA RCKTKQLEKN YDVLKASFDK LKTQYDCLFK ENESLRNEVH LLKDKLINSV KGKETSEPIN PLDHVEPQNP
201: SIGVASNLAM VVCKQEDTKS DVLDSDSPRF TDGDYTSFLE PADSSNVFQT EHSDFSQEND TLCFPKLEED HHHDDLPVNS CHLGFQIEDQ SWFSHY

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.