Factsheet for PGSC0003DMT400000694

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096320.2.1	Tomato	nucleus	87.7	92.47
KRH47840	Soybean	nucleus	54.37	57.56
KRH06407	Soybean	nucleus	55.16	56.73
VIT_15s0048g02870.t01	Wine grape	nucleus	52.38	54.32
CDX89136	Canola	nucleus	46.83	51.53
CDX76591	Canola	nucleus	46.83	51.53
AT3G61890.1	Thale cress	nucleus	48.02	51.49
Bra014417.1-P	Field mustard	nucleus	46.43	51.32
CDY71532	Canola	nucleus	46.03	50.88
CDY57869	Canola	nucleus	45.63	50.0
Bra007637.1-P	Field mustard	nucleus	45.63	50.0
CDY41547	Canola	nucleus	48.81	48.43
Bra004516.1-P	Field mustard	nucleus	48.81	48.43
CDX80037	Canola	nucleus	48.81	48.43
AT2G46680.1	Thale cress	nucleus	48.41	47.29
Bra039265.1-P	Field mustard	nucleus	41.67	45.85
CDY27308	Canola	nucleus	41.67	45.85
PGSC0003DMT400047622	Potato	nucleus	38.89	45.79
PGSC0003DMT400013968	Potato	nucleus	36.9	41.33
GSMUA_Achr1P16280_001	Banana	nucleus	34.52	39.55
Zm00001d021268_P001	Maize	nucleus	34.92	36.82
EER99231	Sorghum	nucleus	34.92	36.21
Os09t0528200-01	Rice	nucleus	35.32	35.74
TraesCS5D01G323100.2	Wheat	nucleus	35.32	35.74
TraesCS5A01G316800.1	Wheat	nucleus	34.92	35.34
TraesCS5B01G317400.1	Wheat	nucleus	34.92	35.34
HORVU5Hr1G081090.1	Barley	nucleus	34.92	35.2
Zm00001d006195_P001	Maize	nucleus	32.54	33.61
TraesCS6A01G240400.1	Wheat	nucleus	27.78	31.67
GSMUA_Achr1P18670_001	Banana	nucleus	35.71	31.03
TraesCS6D01G222600.1	Wheat	nucleus	26.98	30.22
TraesCS6B01G284300.1	Wheat	nucleus	26.59	29.65
TraesCS2D01G387300.1	Wheat	nucleus	28.57	29.63
Zm00001d017422_P001	Maize	nucleus	26.59	28.51
TraesCS2B01G407600.1	Wheat	nucleus	28.97	28.08
Os04t0541700-02	Rice	nucleus	30.56	27.9
EES05814	Sorghum	nucleus	27.38	27.6
HORVU2Hr1G092710.2	Barley	nucleus	28.97	27.44
TraesCS2A01G389400.1	Wheat	nucleus	28.17	26.79
Zm00001d025964_P001	Maize	nucleus	28.17	26.49
Os02t0649300-01	Rice	nucleus	27.38	26.44
Zm00001d002799_P001	Maize	nucleus	27.38	26.44
PGSC0003DMT400002259	Potato	nucleus	24.21	25.96
EES11198	Sorghum	nucleus	27.38	25.56
PGSC0003DMT400003586	Potato	nucleus	24.21	25.52
PGSC0003DMT400032390	Potato	nucleus	17.86	25.42
PGSC0003DMT400001322	Potato	nucleus	28.57	25.26
PGSC0003DMT400081296	Potato	nucleus	17.86	25.14
PGSC0003DMT400017751	Potato	nucleus	22.22	24.89
PGSC0003DMT400054818	Potato	nucleus	19.84	23.58
PGSC0003DMT400007376	Potato	nucleus	27.38	23.31
PGSC0003DMT400006949	Potato	nucleus	22.22	23.05
PGSC0003DMT400079230	Potato	nucleus	25.0	21.58
PGSC0003DMT400065207	Potato	nucleus	27.78	21.41
PGSC0003DMT400045471	Potato	nucleus	25.4	21.26
PGSC0003DMT400065805	Potato	nucleus	25.4	20.91
HORVU6Hr1G061390.1	Barley	nucleus	26.19	20.75
PGSC0003DMT400041655	Potato	nucleus	28.57	20.69
PGSC0003DMT400043251	Potato	nucleus	25.79	20.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102596484	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0ZH66	PFAM:PF00046	PFAM:PF02183	EnsemblPlantsGene:PGSC0003DMG400000248
PGSC:PGSC0003DMG400000248	EnsemblPlants:PGSC0003DMT400000694	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF346	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00029565BD	RefSeq:XP_006339757.1	SEG:seg

Description

HB1 [Source:PGSC_GENE;Acc:PGSC0003DMG400000248]

Coordinates

chr1:-:73906356..73907795

Molecular Weight (calculated)

28711.4 Da

IEP (calculated)

5.722

GRAVY (calculated)

-0.792

Length

252 amino acids

Sequence
(BLAST)

001: MFDAGEFSPS SSTAALSAEC FSSSSCFSSL SSSKKKKINN NNARRFSDEQ IKSLETMFET ETKLEPRKKL QLARELGLQP RQVAIWFQNK RARWKSKQLE
101: RDYSILKSNY DNLASQYESL KKEKQSLLIQ LQKLNDVMQK ERGKYCCKQE IELDNRCAAI KKNEMEGMPS LSFDLSSQHG TNGVISDDDI DSSIKADYLG
201: LDDDAVHHLL KIVEAGDSSL TSPENWGSLN DDGILNHQPN SSSYDHWWDF WS

Best Arabidopsis Sequence Match ( AT3G61890.1 )
(BLAST)

001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS

Arabidopsis Description

ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.