Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G222600.1 | Wheat | nucleus | 93.81 | 94.22 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 89.38 | 91.4 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 88.5 | 62.89 |
| Os02t0649300-01 | Rice | nucleus | 67.26 | 58.24 |
| Zm00001d017422_P001 | Maize | nucleus | 59.29 | 57.02 |
| EES05814 | Sorghum | nucleus | 59.29 | 53.6 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 60.18 | 52.31 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 36.73 | 33.33 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 31.42 | 32.27 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 27.88 | 32.14 |
| Solyc03g082550.2.1 | Tomato | nucleus | 29.65 | 32.06 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 31.86 | 32.0 |
| VIT_02s0025g02590.t01 | Wine grape | nucleus | 26.55 | 31.25 |
| PGSC0003DMT400047622 | Potato | nucleus | 29.2 | 30.84 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 31.42 | 29.22 |
| CDX89136 | Canola | nucleus | 28.76 | 28.38 |
| CDY71532 | Canola | nucleus | 28.32 | 28.07 |
| Bra014417.1-P | Field mustard | nucleus | 28.32 | 28.07 |
| Solyc06g053220.2.1 | Tomato | nucleus | 27.88 | 28.0 |
| Solyc01g096320.2.1 | Tomato | nucleus | 29.2 | 27.62 |
| PGSC0003DMT400013968 | Potato | nucleus | 26.99 | 27.11 |
| CDX76591 | Canola | nucleus | 27.43 | 27.07 |
| CDY27308 | Canola | nucleus | 27.43 | 27.07 |
| KRH47840 | Soybean | nucleus | 28.32 | 26.89 |
| CDX80037 | Canola | nucleus | 30.09 | 26.77 |
| Bra004516.1-P | Field mustard | nucleus | 30.09 | 26.77 |
| CDY41547 | Canola | nucleus | 30.09 | 26.77 |
| PGSC0003DMT400000694 | Potato | nucleus | 29.65 | 26.59 |
| KRH06407 | Soybean | nucleus | 28.76 | 26.53 |
| TraesCS5B01G246700.1 | Wheat | nucleus | 31.42 | 26.39 |
| AT3G61890.1 | Thale cress | nucleus | 27.43 | 26.38 |
| Bra039265.1-P | Field mustard | nucleus | 26.55 | 26.2 |
| Bra007637.1-P | Field mustard | nucleus | 26.55 | 26.09 |
| CDY57869 | Canola | nucleus | 26.55 | 26.09 |
| AT2G46680.1 | Thale cress | nucleus | 29.2 | 25.58 |
| KRH64347 | Soybean | nucleus | 26.99 | 24.9 |
| KRH53589 | Soybean | nucleus | 27.43 | 24.7 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 31.42 | 24.48 |
| TraesCS5B01G197700.1 | Wheat | nucleus | 30.53 | 23.08 |
| TraesCS4B01G305300.1 | Wheat | nucleus | 30.09 | 21.52 |
| TraesCS4B01G287600.1 | Wheat | nucleus | 29.2 | 19.94 |
| TraesCS6B01G321100.1 | Wheat | nucleus | 28.32 | 18.66 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF341 | SMART:SM00389 | SUPFAM:SSF46689 |
| EnsemblPlantsGene:TraesCS6B01G284300 | EnsemblPlants:TraesCS6B01G284300.1 | TIGR:cd00086 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6B:-:512447547..512448327
Molecular Weight (calculated)
25585.7 Da
IEP (calculated)
4.845
GRAVY (calculated)
-0.809
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDCQFLLA PPPRMYAAPG DDGQFLQQQQ QQLSGGGAGE RKRRFTEEQV RSLESTFHTR RAKLDPREKA ELARELGLQP RQVAIWFQNK RARWRSKQLE
101: QDFAELRGHY DALRARVESL KQEKLTLAAQ LEELKKKLDE RQDQSASCGG SCAVADVDDK RDNVSSCVAA KDESAAPAAD VSDGSTPGWY EYDDHLVYGV
201: DLHEPFCATQ ELWETSWPLV EWNAVA
101: QDFAELRGHY DALRARVESL KQEKLTLAAQ LEELKKKLDE RQDQSASCGG SCAVADVDDK RDNVSSCVAA KDESAAPAAD VSDGSTPGWY EYDDHLVYGV
201: DLHEPFCATQ ELWETSWPLV EWNAVA
001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
Arabidopsis Description
ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.