CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06407	Soybean	nucleus	93.28	90.61
VIT_15s0048g02870.t01	Wine grape	nucleus	57.56	56.38
Solyc01g096320.2.1	Tomato	nucleus	55.88	55.65
PGSC0003DMT400000694	Potato	nucleus	57.56	54.37
Bra014417.1-P	Field mustard	nucleus	47.48	49.56
CDX89136	Canola	nucleus	47.48	49.34
AT3G61890.1	Thale cress	nucleus	48.32	48.94
CDY41547	Canola	nucleus	52.1	48.82
CDY71532	Canola	nucleus	46.64	48.68
CDX76591	Canola	nucleus	46.64	48.47
Bra004516.1-P	Field mustard	nucleus	51.68	48.43
CDX80037	Canola	nucleus	51.68	48.43
Bra007637.1-P	Field mustard	nucleus	45.38	46.96
CDY57869	Canola	nucleus	45.38	46.96
AT2G46680.1	Thale cress	nucleus	50.84	46.9
CDY27308	Canola	nucleus	44.96	46.72
Bra039265.1-P	Field mustard	nucleus	44.96	46.72
KRH64347	Soybean	nucleus	44.12	42.86
KRH53589	Soybean	nucleus	44.96	42.63
GSMUA_Achr1P16280_001	Banana	nucleus	34.45	37.27
Zm00001d021268_P001	Maize	nucleus	37.4	37.24
TraesCS5D01G323100.2	Wheat	nucleus	38.24	36.55
HORVU5Hr1G081090.1	Barley	nucleus	38.24	36.4
TraesCS5B01G317400.1	Wheat	nucleus	37.82	36.14
TraesCS5A01G316800.1	Wheat	nucleus	37.82	36.14
EER99231	Sorghum	nucleus	36.55	35.8
Os09t0528200-01	Rice	nucleus	36.13	34.54
Zm00001d006195_P001	Maize	nucleus	34.03	33.2
GSMUA_Achr1P18670_001	Banana	nucleus	35.71	29.31
TraesCS2D01G387300.1	Wheat	nucleus	29.83	29.22
TraesCS6A01G240400.1	Wheat	nucleus	26.89	28.96
TraesCS6B01G284300.1	Wheat	nucleus	26.89	28.32
TraesCS6D01G222600.1	Wheat	nucleus	26.47	28.0
TraesCS2B01G407600.1	Wheat	nucleus	29.83	27.31
Zm00001d017422_P001	Maize	nucleus	26.89	27.23
EES05814	Sorghum	nucleus	28.57	27.2
Os04t0541700-02	Rice	nucleus	31.51	27.17
HORVU2Hr1G092710.2	Barley	nucleus	30.25	27.07
Zm00001d002799_P001	Maize	nucleus	28.57	26.05
TraesCS2A01G389400.1	Wheat	nucleus	28.99	26.04
KRH26193	Soybean	nucleus	21.01	25.91
EES11198	Sorghum	nucleus	28.99	25.56
Zm00001d025964_P001	Maize	nucleus	28.57	25.37
Os02t0649300-01	Rice	nucleus	27.73	25.29
KRH55168	Soybean	nucleus	21.01	25.0
KRH43132	Soybean	nucleus	31.51	24.04
KRH59287	Soybean	nucleus	30.67	23.78
KRG93337	Soybean	nucleus	25.63	22.85
KRG99129	Soybean	nucleus	26.05	22.22
KRH20007	Soybean	nucleus	20.59	22.17
KRH45876	Soybean	nucleus	26.05	22.14
KRG97544	Soybean	nucleus	29.83	22.05
KRH31331	Soybean	nucleus	28.99	21.97
KRH40114	Soybean	nucleus	24.79	21.85
KRH32628	Soybean	nucleus	20.59	21.78
KRH20316	Soybean	nucleus	26.05	21.75
KRH69308	Soybean	nucleus	26.47	21.36
KRH74821	Soybean	nucleus	26.05	21.31
KRH01157	Soybean	nucleus	23.95	21.27
KRG96107	Soybean	nucleus	18.91	21.03
KRH18490	Soybean	nucleus	25.63	20.96
KRG99070	Soybean	nucleus	15.13	20.93
KRG93515	Soybean	nucleus	25.63	20.89
KRH69374	Soybean	nucleus	30.25	20.87
KRH54501	Soybean	nucleus, plastid	28.15	20.55
KRH74760	Soybean	nucleus	29.41	20.29
KRH56963	Soybean	nucleus, plastid	27.73	19.94
HORVU6Hr1G061390.1	Barley	nucleus	26.47	19.81
KRG99178	Soybean	nucleus	26.89	19.75
KRH67812	Soybean	nucleus	19.33	19.74
KRH03417	Soybean	nucleus, plastid	26.89	19.45
KRH45836	Soybean	nucleus	26.05	19.38
KRH63409	Soybean	nucleus, plastid	16.39	14.66

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100797862	MapMan:15.5.3.1	UniProt:A0A0K2CTA9	EMBL:ACUP02004175	ncoils:Coil
EnsemblPlantsGene:GLYMA_07G052100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	UniProt:I1KHS0	InterPro:IPR001356	EnsemblPlants:KRH47840
ProteinID:KRH47840	ProteinID:KRH47840.1	EMBL:KT031175	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF346	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0001BA86C1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:4527446..4528923

Molecular Weight (calculated)

27336.7 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.952

Length

238 amino acids

Sequence
(BLAST)

001: MEYTYSAGVE AETHTSSSTT PSRSKKRNNN TRRFSDEQIK SLETMFESES RLEPRKKLQL ARELGLQPRQ VAIWFQNKRA RWKSKQLERD YGILQSNYNS
101: LASRFEALKK ENQTLLIQLQ KLNHLMQKPM EPGQRCTQVE AANSMDSESE NGGTMKCEAE GKPSPSMEIS EHLLGVLSDD DTSIKVEDFG LEDEHGLLNF
201: AKHVDGSLTS PEDWNAFESN DLLGQSTTDD YQWWDFWS

Best Arabidopsis Sequence Match ( AT3G61890.1 )
(BLAST)

001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS

Arabidopsis Description

ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.