CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74760	Soybean	nucleus	93.33	93.33
KRH45836	Soybean	nucleus	57.1	61.56
KRG99178	Soybean	nucleus	55.36	58.95
VIT_01s0026g01550.t01	Wine grape	nucleus	54.78	58.88
Solyc05g006980.2.1	Tomato	nucleus	43.19	51.74
Solyc04g005800.2.1	Tomato	nucleus	43.48	50.51
PGSC0003DMT400045471	Potato	nucleus	44.06	50.5
PGSC0003DMT400007376	Potato	nucleus	43.19	50.34
KRH54501	Soybean	nucleus, plastid	45.8	48.47
KRH56963	Soybean	nucleus, plastid	45.22	47.13
KRH03417	Soybean	nucleus, plastid	44.64	46.81
KRH63409	Soybean	nucleus, plastid	35.94	46.62
KRH20316	Soybean	nucleus	30.72	37.19
KRG93337	Soybean	nucleus	28.7	37.08
KRH74821	Soybean	nucleus	28.7	34.02
KRH69308	Soybean	nucleus	28.7	33.56
KRG99129	Soybean	nucleus	26.96	33.33
KRH45876	Soybean	nucleus	26.96	33.21
KRH01157	Soybean	nucleus	24.64	31.72
KRH43132	Soybean	nucleus	28.41	31.41
KRG96107	Soybean	nucleus	19.42	31.31
KRH59287	Soybean	nucleus	27.83	31.27
KRH20007	Soybean	nucleus	20.0	31.22
KRH40114	Soybean	nucleus	24.35	31.11
KRG97544	Soybean	nucleus	28.99	31.06
KRH55168	Soybean	nucleus	17.68	30.5
KRH31331	Soybean	nucleus	27.54	30.25
KRH47840	Soybean	nucleus	20.87	30.25
KRH18490	Soybean	nucleus	25.51	30.24
KRH26193	Soybean	nucleus	16.81	30.05
KRH67812	Soybean	nucleus	20.29	30.04
KRG93515	Soybean	nucleus	25.22	29.79
KRH32628	Soybean	nucleus	19.42	29.78
KRG99070	Soybean	nucleus	14.49	29.07
KRH06407	Soybean	nucleus	20.58	28.98
KRH64347	Soybean	nucleus	19.13	26.94
KRH53589	Soybean	nucleus	19.13	26.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:547565	EMBL:ACUP02000703	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G022300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	UniProt:I1JBR7	InterPro:IPR001356	EnsemblPlants:KRH69374	ProteinID:KRH69374
ProteinID:KRH69374.1	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF495	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00015B8536
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:2020747..2023102

Molecular Weight (calculated)

39147.2 Da

IEP (calculated)

4.393

GRAVY (calculated)

-0.825

Length

345 amino acids

Sequence
(BLAST)

001: MASGKLYAGS NMSLLLQNER LPCSSEVLES LWAQTSNPAS FQGSKPVVDF ENVSGSRMTD RPFFQALEKE ENCDEDYEGC FHQPGKKRRL TSEQVQFLER
101: NFEVENKLEP ERKVQLAKEL GLQPRQVAIW FQNRRARFKT KQLEKDYGVL KASYDRLKSD YESLVQENDK LKAEVNSLES KLILRDKEKE ENSDDKSSPD
201: DAVNSSSPHN NKEPMDLLII SKNATTTTTS ENGTKVLSPL PLPIMVTCCK QEDANSAKSD VLDSDSPHCT SFVEPADSSH AFEPEDHSED FSQDEEDNLS
301: ENLLMTFPSS CCLPKVEEHC YDGPPENSCN FGFQVEDQTF CFWPY

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.