Factsheet for VIT_01s0026g01550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g05630.t01	Wine grape	nucleus	56.39	57.1
KRH74760	Soybean	nucleus	59.81	55.65
KRH69374	Soybean	nucleus	58.88	54.78
KRH45836	Soybean	nucleus	53.27	53.44
Solyc05g006980.2.1	Tomato	nucleus	47.35	52.78
PGSC0003DMT400045471	Potato	nucleus	47.98	51.16
PGSC0003DMT400007376	Potato	nucleus	46.73	50.68
KRG99178	Soybean	nucleus	50.78	50.31
Solyc04g005800.2.1	Tomato	nucleus	46.42	50.17
VIT_14s0066g01440.t01	Wine grape	nucleus	35.83	42.12
VIT_08s0007g04200.t01	Wine grape	nucleus	23.68	34.55
VIT_01s0026g01950.t01	Wine grape	nucleus	30.22	34.04
VIT_14s0108g00390.t01	Wine grape	nucleus	29.59	33.57
VIT_19s0014g02110.t01	Wine grape	nucleus	16.51	32.92
VIT_18s0001g06430.t01	Wine grape	nucleus	28.97	32.4
VIT_10s0003g00380.t01	Wine grape	nucleus	17.13	32.16
VIT_15s0048g02870.t01	Wine grape	nucleus	23.68	31.28
VIT_02s0025g02590.t01	Wine grape	nucleus	18.69	31.25
VIT_16s0098g01170.t01	Wine grape	nucleus	21.81	31.11
VIT_07s0191g00180.t01	Wine grape	nucleus	31.15	29.85

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100241577	wikigene:100241577	MapMan:15.5.3.1	ProteinID:CBI32024	ProteinID:CBI32024.3
ncoils:Coil	UniProt:D7TNF1	EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100241577	wikigene:LOC100241577	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF495	SMART:SM00389	SUPFAM:SSF46689
TIGR:TC52961	TIGR:TC61789	TIGR:TC66831	UniParc:UPI00015CB243	ArrayExpress:VIT_01s0026g01550	EnsemblPlantsGene:VIT_01s0026g01550
EnsemblPlants:VIT_01s0026g01550.t01	RefSeq:XP_002269605	RefSeq:XP_002269605.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:10605157..10607755

Molecular Weight (calculated)

36431.3 Da

IEP (calculated)

4.575

GRAVY (calculated)

-0.816

Length

321 amino acids

Sequence
(BLAST)

001: MDGRKLYGGG SNMAVLLRKE TLPSPSELLE SFWIPDSSTT FHGSKSVVNF EGVGGDDTKD RPFFQTLHEE ENGDEDFEGC FHRPEKKRRL TAGQVQFLER
101: NFEVENKLEP ERKNQLAKEL GLQPRQVAIW FQNRRARFKT KQLEKDYDSL KASYDSLKAD YDCILKEKEK LKTELLLLTD KALIGEKEGE KTKALENISP
201: SHAESQKAIP NRVSEHVPPN APILFCKQED ASSAKSDVFD SDSPLYTDGN HSSLLEPADS SQIFEPDQSE FSQDEEDNLS KSLIPPLCFP KLEDCSYPDP
301: PANACNLGLP AEEQPFWFWS Y

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.