Factsheet for VIT_10s0003g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g02250.t01
VIT_04s0079g00280.t01
VIT_15s0021g02720.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53980.1	VIT_02s0025g02250.t01	AT1G64620.1	21245844
AT5G53980.1	VIT_04s0079g00280.t01	AT3G03200.1	21245844
AT5G53980.1	VIT_15s0021g02720.t01	AT3G60580.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081296	Potato	nucleus	63.16	60.34
Solyc02g077590.1.1	Tomato	nucleus	60.82	58.1
VIT_19s0014g02110.t01	Wine grape	nucleus	49.71	52.8
AT5G53980.1	Thale cress	nucleus	42.11	46.15
Bra022687.1-P	Field mustard	nucleus	41.52	45.51
CDY28803	Canola	nucleus	41.52	45.51
CDY69536	Canola	nucleus	40.94	44.87
VIT_08s0007g04200.t01	Wine grape	nucleus	27.49	21.36
VIT_14s0108g00390.t01	Wine grape	nucleus	33.33	20.14
VIT_01s0026g01950.t01	Wine grape	nucleus	33.33	20.0
VIT_14s0066g01440.t01	Wine grape	nucleus	31.58	19.78
VIT_15s0048g02870.t01	Wine grape	nucleus	28.07	19.75
VIT_16s0098g01170.t01	Wine grape	nucleus	25.15	19.11
VIT_02s0025g02590.t01	Wine grape	nucleus	21.05	18.75
VIT_17s0000g05630.t01	Wine grape	nucleus	33.92	18.3
VIT_18s0001g06430.t01	Wine grape	nucleus	30.41	18.12
VIT_01s0026g01550.t01	Wine grape	nucleus	32.16	17.13
VIT_07s0191g00180.t01	Wine grape	nucleus	32.75	16.72

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100262396	wikigene:100262396	MapMan:15.5.3.1	UniProt:A5C5U4	EMBL:AM483398
ProteinID:CAN64250	ProteinID:CAN64250.1	ProteinID:CCB55631	ProteinID:CCB55631.1	ncoils:Coil	EMBL:FN595992
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100262396	wikigene:LOC100262396	PFAM:PF00046	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF522	SMART:SM00389	SUPFAM:SSF46689
TIGR:TC71088	UniParc:UPI0001522A6B	ArrayExpress:VIT_10s0003g00380	EnsemblPlantsGene:VIT_10s0003g00380	EnsemblPlants:VIT_10s0003g00380.t01	RefSeq:XP_002273463
RefSeq:XP_002273463.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:1666456..1667669

Molecular Weight (calculated)

19525.2 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.740

Length

171 amino acids

Sequence
(BLAST)

001: MDFFQSQARK HQPKFSKKRL TKDQVRLLET SFDLNNKLDS DRKLQLAQEL GIPPRQVAIW YQNKRARWKN QSLELEYNAL QLRLDAALGD KRKLEKEVDR
101: LKQELQKAQE VLLSCNVTYS TLTSLSTSCD EDGSSSLLGD SKLGLDKELY ACLIGGGDQF PKSDDSHGLF T

Best Arabidopsis Sequence Match ( AT5G53980.1 )
(BLAST)

001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV

Arabidopsis Description

ATHB-52Homeobox-leucine zipper protein ATHB-52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.