Factsheet for VIT_14s0066g01440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001322	Potato	nucleus	71.43	68.42
Solyc02g086930.2.1	Tomato	nucleus	71.06	68.07
KRG93337	Soybean	nucleus	63.0	64.42
KRH20316	Soybean	nucleus	65.93	63.16
AT3G01470.1	Thale cress	nucleus	57.14	57.35
Bra039116.1-P	Field mustard	nucleus	52.75	55.38
CDY37519	Canola	nucleus	52.75	55.38
CDY49056	Canola	nucleus	52.38	54.37
CDY28673	Canola	nucleus	52.38	52.57
Bra040519.1-P	Field mustard	nucleus	52.01	51.82
GSMUA_Achr9P14570_001	Banana	nucleus	49.82	51.71
GSMUA_Achr5P05300_001	Banana	nucleus	36.63	48.54
GSMUA_Achr3P06190_001	Banana	nucleus	46.89	45.23
Zm00001d017920_P001	Maize	nucleus	52.38	43.33
KXG30829	Sorghum	nucleus	53.11	42.52
GSMUA_Achr9P18360_001	Banana	nucleus	43.96	42.4
Zm00001d051749_P001	Maize	nucleus	52.38	42.18
GSMUA_Achr8P25940_001	Banana	nucleus	44.32	42.16
Os02t0729700-01	Rice	nucleus	51.28	40.82
Zm00001d050310_P001	Maize	nucleus	39.93	40.07
Zm00001d032316_P001	Maize	nucleus	39.56	40.0
KXG25140	Sorghum	nucleus	40.29	40.0
TraesCS6A01G290800.1	Wheat	nucleus	49.45	39.71
TraesCS6B01G321100.1	Wheat	nucleus	49.45	39.36
VIT_17s0000g05630.t01	Wine grape	nucleus	43.22	37.22
VIT_08s0007g04200.t01	Wine grape	nucleus	29.3	36.36
TraesCS6D01G272000.1	Wheat	nucleus	49.45	36.1
VIT_01s0026g01550.t01	Wine grape	nucleus	42.12	35.83
HORVU6Hr1G072810.7	Barley	nucleus	45.42	35.63
Os08t0416000-01	Rice	nucleus	44.32	34.67
VIT_19s0014g02110.t01	Wine grape	nucleus	19.78	33.54
TraesCS5D01G205000.1	Wheat	nucleus	35.16	32.11
VIT_10s0003g00380.t01	Wine grape	nucleus	19.78	31.58
TraesCS5B01G197700.1	Wheat	nucleus	34.43	31.44
TraesCS5A01G199300.1	Wheat	nucleus	34.43	31.33
VIT_15s0048g02870.t01	Wine grape	nucleus	27.84	31.28
Os09t0379600-00	Rice	nucleus	23.81	30.95
VIT_01s0026g01950.t01	Wine grape	nucleus	31.5	30.18
VIT_18s0001g06430.t01	Wine grape	nucleus	31.14	29.62
VIT_14s0108g00390.t01	Wine grape	nucleus	30.04	28.98
VIT_02s0025g02590.t01	Wine grape	nucleus	20.15	28.65
VIT_16s0098g01170.t01	Wine grape	nucleus	23.44	28.44
Zm00001d005692_P001	Maize	nucleus	29.3	28.27
HORVU5Hr1G059410.2	Barley	nucleus	33.7	28.05
VIT_07s0191g00180.t01	Wine grape	nucleus	33.33	27.16
EER98832	Sorghum	nucleus	31.5	27.13

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100257769	wikigene:100257769	MapMan:15.5.3.1	ProteinID:CCB58520	ProteinID:CCB58520.1
ncoils:Coil	UniProt:F6HV02	EMBL:FN596252	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009637	GO:GO:0009651
GO:GO:0009653	GO:GO:0009965	GO:GO:0009987	GO:GO:0017148	GO:GO:0019538	GO:GO:0042803
GO:GO:0043565	GO:GO:0045893	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	EntrezGene:LOC100257769	wikigene:LOC100257769	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF136	SMART:SM00389
SUPFAM:SSF46689	TIGR:TC65877	TIGR:TC67982	UniParc:UPI0001984C4A	ArrayExpress:VIT_14s0066g01440	EnsemblPlantsGene:VIT_14s0066g01440
EnsemblPlants:VIT_14s0066g01440.t01	unigene:Vvi.17175	RefSeq:XP_002278872	RefSeq:XP_002278872.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:27846223..27848780

Molecular Weight (calculated)

30986.1 Da

IEP (calculated)

4.458

GRAVY (calculated)

-0.767

Length

273 amino acids

Sequence
(BLAST)

001: MDSCRLFFDP SSGHGNMLFL GNGDSLFRGP RSIMNIEETS KKRPFFTSPE DMFDEEYYDE QMPEKKRRLT PEQVHLLEKS FEAENKLEPE RKTQLAKKLG
101: LQPRQVAVWF QNRRARWKTK QLERDYDLLK SSYDSLVSEY DSILKEKEKL KSEVVSLTEK LQAKEVTGTP TLTVQKVEPL QADAADVPPV PCSVKVEDRL
201: SSGSGASAVV DEDGPQLLDS GDSYFQNAEY PGCLGVQSEE DDGSDDGQSY FSDALVLPEH HHEEGEALLW VWP

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.