CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017920_P001	Maize	nucleus	90.03	93.03
Os02t0729700-01	Rice	nucleus	78.89	78.43
TraesCS6A01G290800.1	Wheat	nucleus	73.9	74.12
TraesCS6B01G321100.1	Wheat	nucleus	74.19	73.76
HORVU6Hr1G072810.7	Barley	nucleus	69.21	67.82
TraesCS6D01G272000.1	Wheat	nucleus	74.19	67.65
GSMUA_Achr8P25940_001	Banana	nucleus	48.68	57.84
GSMUA_Achr9P18360_001	Banana	nucleus	47.51	57.24
VIT_14s0066g01440.t01	Wine grape	nucleus	42.52	53.11
KXG25140	Sorghum	nucleus	42.52	52.73
Solyc02g086930.2.1	Tomato	nucleus	42.82	51.23
PGSC0003DMT400001322	Potato	nucleus	42.82	51.23
AT3G01470.1	Thale cress	nucleus	39.0	48.9
Bra039116.1-P	Field mustard	nucleus	37.24	48.85
CDY37519	Canola	nucleus	37.24	48.85
KRH20316	Soybean	nucleus	39.88	47.72
CDY49056	Canola	nucleus	36.66	47.53
CDY28673	Canola	nucleus	37.54	47.06
KRG93337	Soybean	nucleus	36.66	46.82
Bra040519.1-P	Field mustard	nucleus	37.24	46.35
OQU81036	Sorghum	nucleus	24.34	45.11
EER98832	Sorghum	nucleus	33.14	35.65
EER96901	Sorghum	nucleus	25.22	31.5
EES05814	Sorghum	nucleus	20.53	28.0
EER92730	Sorghum	nucleus	25.51	26.85
EES11198	Sorghum	nucleus	20.53	25.93
EER99231	Sorghum	nucleus	18.48	25.93
EER92780	Sorghum	nucleus	25.81	24.79
EER94272	Sorghum	nucleus	23.46	22.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	UniProt:A0A194YRG9	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	EnsemblPlants:KXG30829	ProteinID:KXG30829	ProteinID:KXG30829.1	InterPro:Leu_zip_homeo	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF136
SMART:SM00389	EnsemblPlantsGene:SORBI_3004G251300	SUPFAM:SSF46689	UniParc:UPI0001C80D88	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:59757180..59759005

Molecular Weight (calculated)

37066.4 Da

IEP (calculated)

4.383

GRAVY (calculated)

-0.686

Length

341 amino acids

Sequence
(BLAST)

001: MESGRLIFNA PGSGAGQMLF LDCGAAGGPG GGGGGGLFHR GGRPMLGLEE GRGVKRPFFT SPDELLEEEY YDEQLPEKKR RLTPEQVHLL ERSFEEENKL
101: EPERKTELAR KLGLQPRQVA VWFQNRRARW KTKQLERDFD RLKASFDALR ADHDVILQDN HRLRSQVVSL TEKLQEKEAT EGGASAATDA AAALPAVDDV
201: KASLADDVEE PTEPAAEEEE AAFEVQQVKS EDRLSTGSGG SAVVDTDALL YGAGCRFAAA VDSSVESYFP GGEDHHYHDC GMGPVNHGAG GGIQSDDDGA
301: GSDEGCSYYA EEEAAAFFAG HTHHHADDDE DAGQISWWMW N

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.