CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005692_P001	Maize	nucleus	71.92	80.57
TraesCS5D01G205000.1	Wheat	nucleus	55.2	58.53
TraesCS5B01G197700.1	Wheat	nucleus	55.2	58.53
TraesCS5A01G199300.1	Wheat	nucleus	54.57	57.67
Os09t0379600-00	Rice	nucleus	34.07	51.43
HORVU5Hr1G059410.2	Barley	nucleus	53.0	51.22
OQU81036	Sorghum	nucleus	23.34	40.22
KXG25140	Sorghum	nucleus	34.7	40.0
GSMUA_Achr8P25940_001	Banana	nucleus	31.23	34.49
GSMUA_Achr9P18360_001	Banana	nucleus	30.28	33.92
KXG30829	Sorghum	nucleus	35.65	33.14
EER96901	Sorghum	nucleus	27.76	32.23
AT3G01470.1	Thale cress	nucleus	27.13	31.62
VIT_14s0066g01440.t01	Wine grape	nucleus	27.13	31.5
Bra039116.1-P	Field mustard	nucleus	25.55	31.15
CDY37519	Canola	nucleus	25.55	31.15
CDY28673	Canola	nucleus	26.18	30.51
CDY49056	Canola	nucleus	25.24	30.42
Bra040519.1-P	Field mustard	nucleus	26.18	30.29
Solyc02g086930.2.1	Tomato	nucleus	26.5	29.47
KRG93337	Soybean	nucleus	24.61	29.21
KRH20316	Soybean	nucleus	25.87	28.77
PGSC0003DMT400001322	Potato	nucleus	25.87	28.77
EES05814	Sorghum	nucleus	21.14	26.8
EER92730	Sorghum	nucleus	25.87	25.31
EES11198	Sorghum	nucleus	20.82	24.44
EER92780	Sorghum	nucleus	26.81	23.94
EER99231	Sorghum	nucleus	17.35	22.63
EER94272	Sorghum	nucleus	24.29	21.27

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8056196	UniProt:C5XBF6	ncoils:Coil	EnsemblPlants:EER98832
ProteinID:EER98832	ProteinID:EER98832.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF215	SMART:SM00389	EnsemblPlantsGene:SORBI_3002G189000	SUPFAM:SSF46689	unigene:Sbi.8568	UniParc:UPI0001A83ED7
RefSeq:XP_002462311.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:57498941..57501442

Molecular Weight (calculated)

34610.9 Da

IEP (calculated)

4.384

GRAVY (calculated)

-0.622

Length

317 amino acids

Sequence
(BLAST)

001: MDYARSMISS SAVPFRAAGD GDGGGQVFLF GGRGGGGFLR GLPLVGGASA AAGAAADGRR KRAFQLTTAH EEPQLELGDD ELCGGFDYEL LHGPQQQERT
101: KRRLTAEQVR ELELSFEEEK RKLEPERKSE LARRLGIAPR QVAVWFQNRR ARWRTKQLEQ DFDRLRAAHD DLLAGRDALL ADNDRLRSQV ITLTEKLQAK
201: ESSASEPEEF TVATQETAYA LFEEDKLCLC SEIATGSTAA AAPGSNDSPE SYFAGACSPP SSPEDDGCGG ADDRTFFLPD ALLATGVEES LERAAEEDDG
301: AGTQLNNWAW LWNDQQY

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.