CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050310_P001	Maize	nucleus	93.09	94.12
Zm00001d032316_P001	Maize	nucleus	90.91	92.59
Os08t0416000-01	Rice	nucleus	81.82	64.47
GSMUA_Achr8P25940_001	Banana	nucleus	44.73	42.86
GSMUA_Achr9P18360_001	Banana	nucleus	44.0	42.76
KXG30829	Sorghum	nucleus	52.73	42.52
OQU81036	Sorghum	nucleus	27.64	41.3
VIT_14s0066g01440.t01	Wine grape	nucleus	40.0	40.29
Solyc02g086930.2.1	Tomato	nucleus	39.64	38.25
PGSC0003DMT400001322	Potato	nucleus	39.27	37.89
AT3G01470.1	Thale cress	nucleus	37.45	37.87
Bra039116.1-P	Field mustard	nucleus	34.55	36.54
CDY37519	Canola	nucleus	34.55	36.54
KRG93337	Soybean	nucleus	34.55	35.58
CDY49056	Canola	nucleus	33.45	34.98
CDY28673	Canola	nucleus	34.55	34.93
EER98832	Sorghum	nucleus	40.0	34.7
KRH20316	Soybean	nucleus	35.64	34.39
Bra040519.1-P	Field mustard	nucleus	34.18	34.31
EER96901	Sorghum	nucleus	31.64	31.87
EES05814	Sorghum	nucleus	23.27	25.6
EER92780	Sorghum	nucleus	31.27	24.23
EER92730	Sorghum	nucleus	27.64	23.46
EER99231	Sorghum	nucleus	20.0	22.63
EES11198	Sorghum	nucleus	21.09	21.48
EER94272	Sorghum	nucleus	27.27	20.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	UniProt:A0A1B6PHI9	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	EnsemblPlants:KXG25140	ProteinID:KXG25140	ProteinID:KXG25140.1	InterPro:Leu_zip_homeo	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF188
SMART:SM00389	EnsemblPlantsGene:SORBI_3007G126400	SUPFAM:SSF46689	UniParc:UPI00015B8533	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:53917468..53921231

Molecular Weight (calculated)

30210.8 Da

IEP (calculated)

4.586

GRAVY (calculated)

-0.695

Length

275 amino acids

Sequence
(BLAST)

001: MDPSAVSFDS GGARRGGGGG GAQMLLFGGG GSANSNGFFR GVPMAVLGMD DATRVGKRPF FTTHEELLEE EYYDEQAPEK KRRLTAEQVQ LLERSFEEEN
101: KLEPERKTEL ARRLGMAPRQ VAVWFQNRRA RWKTKQLETD YDRLKAAYDA LAADHQGLLA DNDSLRAQVI SLTDKLQRKE TSPSATTAAQ EVDQPDEHTA
201: ASGTEKLLVQ QLKDDLHSSG DFTGHGALSS EEEDGGVVSD EGCSFDLPDA MFAAGVTHHG AEEAQLANWT SWFWN

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.