CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014201_P001	Maize	nucleus	80.66	83.91
Zm00001d033005_P001	Maize	nucleus	81.22	80.99
Os10t0404900-01	Rice	nucleus	68.51	69.86
TraesCS4B01G287600.1	Wheat	nucleus	56.08	61.33
TraesCS4D01G286400.2	Wheat	nucleus	56.08	59.88
TraesCS4A01G016600.1	Wheat	nucleus, plastid	55.25	59.17
EER92780	Sorghum	nucleus	58.01	59.15
GSMUA_Achr1P21620_001	Banana	nucleus	42.82	55.16
GSMUA_Achr6P10660_001	Banana	nucleus	42.54	54.42
GSMUA_Achr2P07420_001	Banana	nucleus	43.65	54.11
GSMUA_Achr1P12270_001	Banana	nucleus	42.27	52.22
HORVU4Hr1G075180.3	Barley	nucleus, plastid	56.08	51.52
GSMUA_Achr7P11600_001	Banana	nucleus	38.95	51.09
VIT_01s0026g01950.t01	Wine grape	nucleus	39.78	50.53
GSMUA_Achr10P...	Banana	nucleus	39.5	50.0
PGSC0003DMT400002259	Potato	nucleus	32.04	49.36
KRG99129	Soybean	nucleus	37.29	48.39
KRG99070	Soybean	nucleus	22.93	48.26
GSMUA_Achr3P21430_001	Banana	nucleus	35.36	48.12
KRH45876	Soybean	nucleus	36.46	47.14
KRH74821	Soybean	nucleus	37.85	47.08
Solyc05g007180.2.1	Tomato	nucleus	39.5	46.89
KRH69308	Soybean	nucleus	38.12	46.78
Solyc01g010600.2.1	Tomato	nucleus	31.22	46.5
PGSC0003DMT400065805	Potato	nucleus	39.23	46.41
GSMUA_Achr6P36450_001	Banana	nucleus	29.28	45.69
Bra003980.1-P	Field mustard	nucleus	31.49	45.24
CDY48391	Canola	nucleus	31.49	45.24
CDY44091	Canola	nucleus	32.87	44.74
VIT_14s0108g00390.t01	Wine grape	nucleus	34.81	44.52
GSMUA_Achr7P20950_001	Banana	nucleus	29.01	44.49
CDY38759	Canola	nucleus	34.81	44.37
AT1G69780.1	Thale cress	nucleus	35.91	44.22
Bra007881.1-P	Field mustard	nucleus	34.81	44.21
Bra016266.1-P	Field mustard	nucleus	34.81	43.75
CDY11659	Canola	nucleus	34.81	43.75
CDY23547	Canola	nucleus	33.7	43.57
GSMUA_Achr4P00550_001	Banana	nucleus	33.43	43.21
CDY70870	Canola	nucleus	34.81	41.86
OQU81036	Sorghum	nucleus	20.99	41.3
HORVU4Hr1G075170.1	Barley	nucleus	28.45	40.23
EER96901	Sorghum	nucleus	25.41	33.7
EES05814	Sorghum	nucleus	19.89	28.8
KXG25140	Sorghum	nucleus	20.72	27.27
EER99231	Sorghum	nucleus	16.85	25.1
EER92730	Sorghum	nucleus	22.38	25.0
EER98832	Sorghum	nucleus	21.27	24.29
EES11198	Sorghum	nucleus	17.96	24.07
KXG30829	Sorghum	nucleus	22.1	23.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8067537	UniProt:C5WM88	ncoils:Coil	EnsemblPlants:EER94272
ProteinID:EER94272	ProteinID:EER94272.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF225	SMART:SM00389	EnsemblPlantsGene:SORBI_3001G253900	SUPFAM:SSF46689	unigene:Sbi.11035	UniParc:UPI0001A83346
RefSeq:XP_002467274.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:28076570..28079329

Molecular Weight (calculated)

38681.1 Da

IEP (calculated)

6.618

GRAVY (calculated)

-0.696

Length

362 amino acids

Sequence
(BLAST)

001: MKPMATNGMA PSFFPANFLL QMQQPLHHQQ QQEHHHHHHQ HHHDDHHLLA PPPPALVSPF LHDFGGAMAA PPPMLAGGLG MGGDDSHLHA AEPQQQQDGG
101: GVASDDEEVS AAAGGGCGGE RKRRLSVEQV RTLERSFEVA NKLEPERKAQ LARALGLQPR QVAIWFQNRR ARWKTKQLEK DYDALRRQLD AARAENDTLL
201: SHNKKLQAEI MALKGGGGGG GGGGRHQEAA SELINLNVKE TEASCSNRSE NSSEINLDIS RPPQAPPPAA DDSPTMNSYR GSLPFYASAT ARADIDQLLH
301: SGGGHPSPAP KMELGHGTAA DTPPATAAPG GGGGTFGSLL CGAAVDEQPP FWPWADGHHT FQ

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.