Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G016600.1 | Wheat | nucleus, plastid | 64.06 | 48.52 |
| TraesCS4B01G287600.1 | Wheat | nucleus | 60.16 | 46.53 |
| TraesCS4D01G286400.2 | Wheat | nucleus | 60.16 | 45.43 |
| HORVU4Hr1G075180.3 | Barley | nucleus, plastid | 60.94 | 39.59 |
| EER92780 | Sorghum | nucleus | 52.73 | 38.03 |
| Zm00001d027852_P001 | Maize | nucleus | 50.78 | 37.79 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 38.67 | 37.22 |
| Zm00001d048312_P001 | Maize | nucleus | 49.61 | 36.92 |
| VIT_01s0026g01950.t01 | Wine grape | nucleus | 39.45 | 35.44 |
| CDY44091 | Canola | nucleus | 36.33 | 34.96 |
| PGSC0003DMT400002259 | Potato | nucleus | 32.03 | 34.89 |
| Bra003980.1-P | Field mustard | nucleus | 33.98 | 34.52 |
| CDY48391 | Canola | nucleus | 33.98 | 34.52 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 37.89 | 34.52 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 36.72 | 34.06 |
| KRG99129 | Soybean | nucleus | 37.11 | 34.05 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 38.67 | 33.9 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 30.47 | 33.62 |
| KRH45876 | Soybean | nucleus | 36.72 | 33.57 |
| VIT_14s0108g00390.t01 | Wine grape | nucleus | 37.11 | 33.57 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 30.86 | 33.47 |
| Solyc01g010600.2.1 | Tomato | nucleus | 31.64 | 33.33 |
| KRH74821 | Soybean | nucleus | 37.89 | 33.33 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 36.33 | 32.86 |
| PGSC0003DMT400065805 | Potato | nucleus | 38.67 | 32.35 |
| AT1G69780.1 | Thale cress | nucleus | 37.11 | 32.31 |
| Bra007881.1-P | Field mustard | nucleus | 35.94 | 32.28 |
| GSMUA_Achr10P... | Banana | nucleus | 35.94 | 32.17 |
| Solyc05g007180.2.1 | Tomato | nucleus | 38.28 | 32.13 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 36.72 | 32.08 |
| KRH69308 | Soybean | nucleus | 36.72 | 31.86 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 34.77 | 31.79 |
| CDY23547 | Canola | nucleus | 33.98 | 31.07 |
| CDY38759 | Canola | nucleus | 34.38 | 30.99 |
| CDY70870 | Canola | nucleus | 36.33 | 30.9 |
| Bra016266.1-P | Field mustard | nucleus | 34.38 | 30.56 |
| CDY11659 | Canola | nucleus | 33.98 | 30.21 |
| Zm00001d014201_P001 | Maize | nucleus | 39.84 | 29.31 |
| EER94272 | Sorghum | nucleus | 40.23 | 28.45 |
| Os10t0404900-01 | Rice | nucleus | 38.67 | 27.89 |
| Zm00001d033005_P001 | Maize | nucleus | 39.06 | 27.55 |
| HORVU5Hr1G070260.1 | Barley | nucleus | 26.95 | 25.84 |
| KRG99070 | Soybean | nucleus | 16.8 | 25.0 |
| HORVU6Hr1G072810.7 | Barley | nucleus | 27.34 | 20.11 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 19.53 | 20.0 |
| HORVU5Hr1G059410.2 | Barley | nucleus | 24.61 | 19.21 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 19.92 | 19.17 |
| HORVU4Hr1G078410.5 | Barley | nucleus, plastid | 24.22 | 18.84 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 20.7 | 16.67 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | UniProt:A0A287PPC3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:HORVU4Hr1G075170 | EnsemblPlants:HORVU4Hr1G075170.1 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF176 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI000B472431 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:596902744..596903828
Molecular Weight (calculated)
19726.7 Da
IEP (calculated)
10.437
GRAVY (calculated)
-0.414
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: VVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXNPFLP SPQCPSLQDF RGGLSPMLGK RPAMYGGGDG GCDEVTGGGG GANEEEXXXX XXXXGGEKKR
101: RLNVEQVRTL EKNFEVANKL EPERKMQLAR ALGLQPRQVA IWFQNRRARW KTKQLEKDYD VLKRQFDAVK AENDALLSHN KKLQSEHLAV AGGRPAKAKV
201: VAVXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSGA GGGEAFLVAR SRFVSV
101: RLNVEQVRTL EKNFEVANKL EPERKMQLAR ALGLQPRQVA IWFQNRRARW KTKQLEKDYD VLKRQFDAVK AENDALLSHN KKLQSEHLAV AGGRPAKAKV
201: VAVXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSGA GGGEAFLVAR SRFVSV
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
Arabidopsis Description
ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.