Factsheet for HORVU4Hr1G078410.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G303500.1	Wheat	nucleus	57.45	59.81
TraesCS4B01G305300.1	Wheat	nucleus	57.45	59.81
TraesCS4A01G405800.1	Wheat	nucleus	48.02	55.44
Os03t0188900-01	Rice	nucleus	42.55	45.02
EER92730	Sorghum	nucleus	42.25	42.9
Zm00001d027991_P001	Maize	nucleus	42.25	42.64
GSMUA_Achr10P...	Banana	nucleus	24.01	41.58
GSMUA_Achr6P10310_001	Banana	nucleus	22.8	36.23
Zm00001d048227_P001	Maize	extracellular, nucleus, plastid	40.73	36.22
HORVU5Hr1G070260.1	Barley	nucleus	27.96	34.46
GSMUA_Achr7P12740_001	Banana	nucleus	23.71	34.21
GSMUA_Achr7P11760_001	Banana	nucleus	24.92	32.54
GSMUA_Achr10P...	Banana	nucleus	24.01	31.98
GSMUA_Achr3P06620_001	Banana	nucleus	25.23	30.29
GSMUA_Achr10P...	Banana	nucleus	24.01	30.04
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	25.23	29.02
GSMUA_Achr9P14960_001	Banana	nucleus	22.8	26.69
HORVU4Hr1G075170.1	Barley	nucleus	18.84	24.22
HORVU5Hr1G081090.1	Barley	nucleus	17.93	23.6
HORVU5Hr1G059410.2	Barley	nucleus	23.1	23.17
HORVU6Hr1G072810.7	Barley	nucleus	24.01	22.7
HORVU2Hr1G092710.2	Barley	nucleus	17.63	21.8
HORVU6Hr1G061390.1	Barley	nucleus	19.15	19.81
HORVU4Hr1G075180.3	Barley	nucleus, plastid	23.71	19.8

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	UniProt:A0A287PRT8	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU4Hr1G078410	EnsemblPlants:HORVU4Hr1G078410.5	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF300	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI000B46577C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:607441933..607443879

Molecular Weight (calculated)

37448.6 Da

IEP (calculated)

10.780

GRAVY (calculated)

-0.901

Length

329 amino acids

Sequence
(BLAST)

001: LLQRVTSHPL RPSSPPSTSS LRSRHPEERR GHCPPRNRSR ALRSSSIPHT ISIITSTVPI SSFEPPISSS SCGDRSRMKR QIKRPAGSKE SPEPGEKLAF
101: AEKENLLAAY MDHEEPELEE ADEEEEEEEE RAMSCGLGGK KRRLALEQVR ALERSFETDN KLDPERKARI ARDLGLHPRQ VAVWFQNRRA RWKTKQLERD
201: FNALRARHDA LRADCDALRR DKDALAAEIH ELREKLSTKP ETAVKAEATG NVEAAEERLQ QATMVGAHGL HVPAHAGTQM AQRVPVRREQ VQRLRLHGGM
301: AVRVGRDWQR RQLRLLLRGA RLQPQLRLV

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.