Factsheet for Os03t0188900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G405800.1	Wheat	nucleus	64.31	70.18
EER92730	Sorghum	nucleus	70.1	67.28
TraesCS4B01G305300.1	Wheat	nucleus	67.85	66.77
TraesCS4D01G303500.1	Wheat	nucleus	67.52	66.46
Zm00001d027991_P001	Maize	nucleus	67.52	64.42
Os10t0377300-01	Rice	nucleus	50.16	51.15
Zm00001d048227_P001	Maize	extracellular, nucleus, plastid	58.2	48.92
GSMUA_Achr6P10310_001	Banana	nucleus	29.58	44.44
Os08t0481400-01	Rice	nucleus	37.94	43.87
Os09t0470500-01	Rice	nucleus	38.26	42.96
HORVU4Hr1G078410.5	Barley	nucleus, plastid	45.02	42.55
GSMUA_Achr10P...	Banana	nucleus	25.72	42.11
GSMUA_Achr7P12740_001	Banana	nucleus	30.87	42.11
GSMUA_Achr7P11760_001	Banana	nucleus	32.8	40.48
GSMUA_Achr3P06620_001	Banana	nucleus	35.05	39.78
GSMUA_Achr10P...	Banana	nucleus	31.51	39.68
GSMUA_Achr10P...	Banana	nucleus	31.83	37.64
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	32.48	35.31
GSMUA_Achr9P14960_001	Banana	nucleus	31.19	34.52
Os09t0379600-00	Rice	nucleus	20.9	30.95
Os02t0729700-01	Rice	nucleus	30.55	27.7
Os02t0649300-01	Rice	nucleus	22.83	27.2
Os08t0416000-01	Rice	nucleus	29.9	26.65
Os09t0528200-01	Rice	nucleus	18.97	23.69
Os10t0404900-01	Rice	nucleus	27.01	23.66
Os04t0541700-02	Rice	nucleus	20.26	22.83
Os03t0170600-01	Rice	cytosol, nucleus	2.89	12.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:4331890	ProteinID:AAN64145.1	ProteinID:ABF94384.1	EMBL:AK101522
EMBL:AK105644	EMBL:AY554032	ProteinID:BAF11133.1	ProteinID:BAS82700.1	ProteinID:BAS82701.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	EnsemblPlantsGene:Os03g0188900
EnsemblPlants:Os03t0188900-01	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF300	UniProt:Q10QP3	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0000DB4899
RefSeq:XP_015628283.1	RefSeq:XP_015628284.1	SEG:seg	:	:	:

Description

HOMEOBOX GENE 13Similar to HAHB-7 (Fragment). (Os03t0188900-01);Similar to cDNA clone:001-200-F05, full insert sequence. (Os03t0188900-02)

Coordinates

chr3:+:4652930..4654781

Molecular Weight (calculated)

33614.4 Da

IEP (calculated)

4.415

GRAVY (calculated)

-0.696

Length

311 amino acids

Sequence
(BLAST)

001: MKRPTSSSRK SKKQGEDLAF SEEGSLPAVT MEQKDEAEME EVDEEEEEEV DEDMAGGHAA QSPSPSCGLG EKKRRLALEQ VRALERSFDT DNKLDPDRKA
101: RIARDLGLQP RQVAVWFQNR RARWKTKQLE RDFAALRARH DALRADCDAL RRDKDALAAE IRELREKLPT KPADTAASVK VEAGNDAAAG AAAATVCKDG
201: SSDDSDSSVV FNDEASPYSG AAFIGFGPSF LVDDASAATV GCSSSLPALE SKWHGPYSDD SCKGGVYGFT EEWLAACSGE MAGNDAAGFF SDEHASNLNF
301: GWCASGNEGW E

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.