Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92730 | Sorghum | nucleus | 84.36 | 84.88 |
| Os03t0188900-01 | Rice | nucleus | 64.42 | 67.52 |
| TraesCS4D01G303500.1 | Wheat | nucleus | 63.19 | 65.19 |
| TraesCS4B01G305300.1 | Wheat | nucleus | 63.19 | 65.19 |
| TraesCS4A01G405800.1 | Wheat | nucleus | 56.44 | 64.56 |
| Zm00001d048227_P001 | Maize | extracellular, nucleus, plastid | 67.18 | 59.19 |
| Zm00001d030532_P002 | Maize | nucleus | 46.01 | 49.18 |
| GSMUA_Achr10P... | Banana | nucleus | 25.77 | 44.21 |
| GSMUA_Achr6P10310_001 | Banana | nucleus | 27.3 | 43.0 |
| HORVU4Hr1G078410.5 | Barley | nucleus, plastid | 42.64 | 42.25 |
| Zm00001d020804_P001 | Maize | nucleus | 33.44 | 41.76 |
| GSMUA_Achr7P12740_001 | Banana | nucleus | 29.14 | 41.67 |
| GSMUA_Achr7P11760_001 | Banana | nucleus | 31.6 | 40.87 |
| GSMUA_Achr10P... | Banana | nucleus | 30.37 | 40.08 |
| GSMUA_Achr3P06620_001 | Banana | nucleus | 31.6 | 37.59 |
| GSMUA_Achr2P14750_001 | Banana | extracellular, nucleus | 31.9 | 36.36 |
| GSMUA_Achr10P... | Banana | nucleus | 29.14 | 36.12 |
| Zm00001d005951_P001 | Maize | nucleus | 33.44 | 35.74 |
| GSMUA_Achr9P14960_001 | Banana | nucleus | 28.83 | 33.45 |
| Zm00001d050310_P001 | Maize | nucleus | 23.93 | 28.68 |
| Zm00001d032316_P001 | Maize | nucleus | 23.62 | 28.52 |
| Zm00001d017422_P001 | Maize | nucleus | 19.94 | 27.66 |
| Zm00001d017920_P001 | Maize | nucleus | 26.69 | 26.36 |
| Zm00001d051749_P001 | Maize | nucleus | 26.38 | 25.37 |
| Zm00001d005692_P001 | Maize | nucleus | 21.47 | 24.73 |
| Zm00001d002799_P001 | Maize | nucleus | 19.63 | 24.52 |
| Zm00001d025964_P001 | Maize | nucleus | 19.33 | 23.51 |
| Zm00001d021268_P001 | Maize | nucleus | 17.18 | 23.43 |
| Zm00001d048312_P001 | Maize | nucleus | 24.54 | 23.26 |
| Zm00001d014201_P001 | Maize | nucleus | 24.54 | 22.99 |
| Zm00001d033005_P001 | Maize | nucleus | 25.46 | 22.86 |
| Zm00001d027852_P001 | Maize | nucleus | 23.93 | 22.67 |
| Zm00001d006195_P001 | Maize | nucleus | 16.87 | 22.54 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | UniProt:A0A096S6J0 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | ProteinID:ONL94440.1 | PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF300 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI00022140D5 | EnsemblPlantsGene:Zm00001d027991 |
| EnsemblPlants:Zm00001d027991_P001 | EnsemblPlants:Zm00001d027991_T001 | SEG:seg | : | : | : |
Description
Homeobox-transcription factor 5HB-type transcription factor
Coordinates
chr1:+:19584556..19586462
Molecular Weight (calculated)
35533.1 Da
IEP (calculated)
4.853
GRAVY (calculated)
-0.739
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRQSKRPTA SRESPETGEK QKLAFAEEEA PPARKVEPDD EAEMDEDEDE LGPGLGGGRA ARSPCGLGEK KRRLALEQVR ALERCFETDN KLDPDRKARI
101: ARDLALQPRQ VAVWFQNRRA RWKTKTLERD FAALRARHDA LRADCDALRR DKDALAAEIR ELRQKLLPKP EATVKLEATT GNDTAEERRQ ATAGAPPAGA
201: CKDGSSDSDS SVVFSDVEAS PYSGGAAFEP PALAGLGAPF LDTSVAPTGC SSPPVFVETK WQQHGPTQYP FPFDSYKACA GYGFTEEWLA SSDLIGSDGG
301: AAGFFSEDHA SSLNFNWCPS GIQGWE
101: ARDLALQPRQ VAVWFQNRRA RWKTKTLERD FAALRARHDA LRADCDALRR DKDALAAEIR ELRQKLLPKP EATVKLEATT GNDTAEERRQ ATAGAPPAGA
201: CKDGSSDSDS SVVFSDVEAS PYSGGAAFEP PALAGLGAPF LDTSVAPTGC SSPPVFVETK WQQHGPTQYP FPFDSYKACA GYGFTEEWLA SSDLIGSDGG
301: AAGFFSEDHA SSLNFNWCPS GIQGWE
001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
Arabidopsis Description
ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.