Factsheet for TraesCS4A01G405800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G303500.1	Wheat	nucleus	96.14	86.71
TraesCS4B01G305300.1	Wheat	nucleus	95.44	86.08
Os03t0188900-01	Rice	nucleus	70.18	64.31
EER92730	Sorghum	nucleus	67.37	59.26
Zm00001d027991_P001	Maize	nucleus	64.56	56.44
HORVU4Hr1G078410.5	Barley	nucleus, plastid	55.44	48.02
GSMUA_Achr6P10310_001	Banana	nucleus	32.28	44.44
Zm00001d048227_P001	Maize	extracellular, nucleus, plastid	56.14	43.24
GSMUA_Achr10P...	Banana	nucleus	27.37	41.05
GSMUA_Achr7P12740_001	Banana	nucleus	31.58	39.47
GSMUA_Achr10P...	Banana	nucleus	33.68	38.87
GSMUA_Achr7P11760_001	Banana	nucleus	34.04	38.49
TraesCS5A01G249000.1	Wheat	nucleus	35.44	37.41
GSMUA_Achr3P06620_001	Banana	nucleus	35.09	36.5
GSMUA_Achr10P...	Banana	nucleus	32.63	35.36
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	34.74	34.62
GSMUA_Achr9P14960_001	Banana	nucleus	32.63	33.1
TraesCS6A01G240400.1	Wheat	nucleus	23.51	30.32
TraesCS5A01G199300.1	Wheat	nucleus	27.37	26.0
TraesCS5A01G316800.1	Wheat	nucleus	21.75	24.9
TraesCS2A01G389400.1	Wheat	nucleus	22.11	23.77
TraesCS6A01G290800.1	Wheat	nucleus	28.07	23.53
TraesCS4A01G016600.1	Wheat	nucleus, plastid	25.26	21.3

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF300	SMART:SM00389	SUPFAM:SSF46689
EnsemblPlantsGene:TraesCS4A01G405800	EnsemblPlants:TraesCS4A01G405800.1	TIGR:cd00086	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:678872316..678873272

Molecular Weight (calculated)

31207.8 Da

IEP (calculated)

4.517

GRAVY (calculated)

-0.712

Length

285 amino acids

Sequence
(BLAST)

001: MEHDEPELEE ADEEEEEEER AMSCGLGGKK RRLALEQVRA LERSFETDNK LDPERKARIA RDLGLHPRQV AVWFQNRRAR WKTKQLERDF NALRARHDAL
101: RADCDALRRD KDALAAEIHE LREKLSTKPE TSVKAEAAGN ADATEERLQQ ATMIGAAVCK DGSSDSDSSA VFNDEASPYS GAVFEQQGFM GFGASFLDSA
201: SAAAATTGGG CSSLPMLEPK WPGAYPYDAG RSGGYGFTEE WLAGSDAIGN DGSAAFFSEE HVSNLNFGWC SSGAEGFDLQ SYCKK

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.