Factsheet for TraesCS6A01G290800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G321100.1	Wheat	nucleus	98.24	97.38
TraesCS6D01G272000.1	Wheat	nucleus	98.24	89.3
HORVU6Hr1G072810.7	Barley	nucleus	86.47	84.48
KXG30829	Sorghum	nucleus	74.12	73.9
Os02t0729700-01	Rice	nucleus	74.41	73.76
Zm00001d017920_P001	Maize	nucleus	70.59	72.73
Zm00001d051749_P001	Maize	nucleus	69.12	69.32
GSMUA_Achr8P25940_001	Banana	nucleus	48.53	57.49
GSMUA_Achr9P18360_001	Banana	nucleus	46.18	55.48
VIT_14s0066g01440.t01	Wine grape	nucleus	39.71	49.45
Bra039116.1-P	Field mustard	nucleus	36.18	47.31
CDY37519	Canola	nucleus	36.18	47.31
Solyc02g086930.2.1	Tomato	nucleus	39.12	46.67
PGSC0003DMT400001322	Potato	nucleus	38.82	46.32
CDY49056	Canola	nucleus	35.59	46.01
AT3G01470.1	Thale cress	nucleus	36.76	45.96
CDY28673	Canola	nucleus	36.47	45.59
Bra040519.1-P	Field mustard	nucleus	36.18	44.89
KRH20316	Soybean	nucleus	37.06	44.21
KRG93337	Soybean	nucleus	34.71	44.19
TraesCS5A01G199300.1	Wheat	nucleus	33.53	38.0
TraesCS5A01G249000.1	Wheat	nucleus	25.88	32.59
TraesCS6A01G240400.1	Wheat	nucleus	19.41	29.86
TraesCS4A01G405800.1	Wheat	nucleus	23.53	28.07
TraesCS4A01G016600.1	Wheat	nucleus, plastid	25.59	25.74
TraesCS5A01G316800.1	Wheat	nucleus	18.53	25.3
TraesCS2A01G389400.1	Wheat	nucleus	17.94	23.02

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF136	SMART:SM00389	SUPFAM:SSF46689
EnsemblPlantsGene:TraesCS6A01G290800	EnsemblPlants:TraesCS6A01G290800.1	TIGR:cd00086	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:-:522226158..522227481

Molecular Weight (calculated)

37074.7 Da

IEP (calculated)

4.356

GRAVY (calculated)

-0.667

Length

340 amino acids

Sequence
(BLAST)

001: MEPGRLIFNT SGSGNGQMLF MDCGAGGIAG AAGMFHRGVR PVLGGMEEGR GVKRPFFTSP DDMLEEEYYD EQLPEKKRRL TPEQVHLLER SFEEENKLEP
101: ERKTELARKL GLQPRQVAVW FQNRRARWKT KTLERDFDRL KASFDALRAD HDALLQDNHR LRSQVVTLTE KMQDKEAPEG SFGAAADASE PEQAAAEAKA
201: SLADAEEQAA AAEAFEVVQQ QLHVKDEERL SPGSGGSAVL DARDALLGSG CGLAGVVDSS VDSYCFPGGA GGDEYHECVV GPVAGGIQSE EDDGAGSDEG
301: CSYYPDDAAV FFAAAQGHGH HRTDDDDQQD DGQISYWMWN

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.