Factsheet for TraesCS6D01G272000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G290800.1	Wheat	nucleus	89.3	98.24
TraesCS6B01G321100.1	Wheat	nucleus	89.3	97.38
HORVU6Hr1G072810.7	Barley	nucleus	78.07	83.91
Os02t0729700-01	Rice	nucleus	68.18	74.34
KXG30829	Sorghum	nucleus	67.65	74.19
Zm00001d017920_P001	Maize	nucleus	64.44	73.03
Zm00001d051749_P001	Maize	nucleus	62.83	69.32
GSMUA_Achr8P25940_001	Banana	nucleus	43.85	57.14
GSMUA_Achr9P18360_001	Banana	nucleus	41.71	55.12
VIT_14s0066g01440.t01	Wine grape	nucleus	36.1	49.45
Bra039116.1-P	Field mustard	nucleus	32.62	46.92
CDY37519	Canola	nucleus	32.62	46.92
Solyc02g086930.2.1	Tomato	nucleus	35.56	46.67
PGSC0003DMT400001322	Potato	nucleus	35.29	46.32
CDY49056	Canola	nucleus	32.09	45.63
AT3G01470.1	Thale cress	nucleus	33.16	45.59
CDY28673	Canola	nucleus	32.89	45.22
KRH20316	Soybean	nucleus	33.96	44.56
Bra040519.1-P	Field mustard	nucleus	32.62	44.53
KRG93337	Soybean	nucleus	31.28	43.82
TraesCS5D01G205000.1	Wheat	nucleus	30.21	37.79
TraesCS5D01G256200.1	Wheat	nucleus	23.26	32.22
TraesCS6D01G222600.1	Wheat	nucleus	17.38	28.89
TraesCS4D01G286400.2	Wheat	nucleus	23.53	25.96
TraesCS4D01G303500.1	Wheat	nucleus	21.66	25.63
TraesCS2D01G387300.1	Wheat	nucleus	16.31	25.1
TraesCS5D01G323100.2	Wheat	nucleus	16.31	24.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF136	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS6D01G272000
EnsemblPlants:TraesCS6D01G272000.1	TIGR:cd00086	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:-:380799345..380800814

Molecular Weight (calculated)

41014.6 Da

IEP (calculated)

4.567

GRAVY (calculated)

-0.629

Length

374 amino acids

Sequence
(BLAST)

001: MEPGRLIFNT SGSGNGQMLF MDCGAGGIAG AAGMFHRGVR PVLGGMEEGR GVKRPFFTSP DDMLEEEYYD EQLPEKKRRL TPEQVHLLER SFEEENKLEP
101: ERKTELARKL GLQPRQVAVW FQNRRARWKT KTLERDFDRL KASFDALRAD HDALLQDNHR LRSQVNNRSQ QPRFITGRAP GLPPLSLIWE IHPSLCRQVV
201: TLTEKMQDKE APEGSFGAAV DALEPEQAAA EAKASLANAE EHAAAAEAFE VVQQQLHVKD EERLSPGSGG SAVLDARDAL LGSGCGLAGV VDSSVDSYCF
301: PGGAGGDEYH ECVMGPVAGG IQSEEDDGAG SDEGCSYYPD DAAVFFAAAQ GHGHHHTDDD DQQDDGQISY WMWN

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.