Factsheet for GSMUA_Achr8P25940_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18360_001	Banana	nucleus	70.38	71.38
GSMUA_Achr9P14570_001	Banana	nucleus	56.45	61.6
GSMUA_Achr3P06190_001	Banana	nucleus	56.1	56.89
GSMUA_Achr5P05300_001	Banana	nucleus	40.77	56.8
Zm00001d017920_P001	Maize	nucleus	57.14	49.7
Os02t0729700-01	Rice	nucleus	58.54	48.98
KXG30829	Sorghum	nucleus	57.84	48.68
Zm00001d051749_P001	Maize	nucleus	57.49	48.67
TraesCS6A01G290800.1	Wheat	nucleus	57.49	48.53
TraesCS6B01G321100.1	Wheat	nucleus	57.14	47.81
HORVU6Hr1G072810.7	Barley	nucleus	55.4	45.69
Zm00001d050310_P001	Maize	nucleus	42.86	45.22
KXG25140	Sorghum	nucleus	42.86	44.73
VIT_14s0066g01440.t01	Wine grape	nucleus	42.16	44.32
PGSC0003DMT400001322	Potato	nucleus	43.9	44.21
Zm00001d032316_P001	Maize	nucleus	41.46	44.07
Solyc02g086930.2.1	Tomato	nucleus	43.55	43.86
TraesCS6D01G272000.1	Wheat	nucleus	57.14	43.85
Bra039116.1-P	Field mustard	nucleus	39.02	43.08
CDY37519	Canola	nucleus	39.02	43.08
CDY28673	Canola	nucleus	40.07	42.28
KRG93337	Soybean	nucleus	39.02	41.95
CDY49056	Canola	nucleus	38.33	41.83
Bra040519.1-P	Field mustard	nucleus	39.72	41.61
KRH20316	Soybean	nucleus	41.12	41.4
AT3G01470.1	Thale cress	nucleus	39.02	41.18
Os08t0416000-01	Rice	nucleus	47.39	38.97
TraesCS5D01G205000.1	Wheat	nucleus	37.98	36.45
TraesCS5A01G199300.1	Wheat	nucleus	37.98	36.33
TraesCS5B01G197700.1	Wheat	nucleus	37.63	36.12
Os09t0379600-00	Rice	nucleus	26.13	35.71
GSMUA_Achr7P12740_001	Banana	nucleus	27.53	34.65
Zm00001d005692_P001	Maize	nucleus	33.45	33.92
GSMUA_Achr10P...	Banana	nucleus	22.3	33.68
HORVU5Hr1G059410.2	Barley	nucleus	36.93	32.32
GSMUA_Achr6P10310_001	Banana	nucleus	22.65	31.4
EER98832	Sorghum	nucleus	34.49	31.23
GSMUA_Achr6P36450_001	Banana	nucleus	25.09	31.03
GSMUA_Achr7P20950_001	Banana	nucleus	25.44	30.93
GSMUA_Achr7P11760_001	Banana	nucleus	26.48	30.16
GSMUA_Achr3P06620_001	Banana	nucleus	28.57	29.93
GSMUA_Achr7P09730_001	Banana	nucleus	30.66	29.33
GSMUA_Achr10P...	Banana	nucleus	26.83	29.28
GSMUA_Achr10P...	Banana	nucleus	25.09	29.15
GSMUA_Achr7P11600_001	Banana	nucleus	26.13	27.17
GSMUA_Achr1P21620_001	Banana	nucleus	26.48	27.05
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	26.83	26.92
GSMUA_Achr10P...	Banana	nucleus	26.48	26.57
GSMUA_Achr3P21430_001	Banana	nucleus	24.39	26.32
GSMUA_Achr4P00550_001	Banana	nucleus	25.44	26.07
GSMUA_Achr2P07420_001	Banana	nucleus	26.13	25.68
GSMUA_Achr1P16280_001	Banana	nucleus	19.51	25.45
GSMUA_Achr9P14960_001	Banana	nucleus	24.74	25.27
GSMUA_Achr1P12270_001	Banana	nucleus	25.78	25.26
GSMUA_Achr10P...	Banana	nucleus	29.62	24.57
GSMUA_Achr6P10660_001	Banana	nucleus	23.69	24.03
GSMUA_Achr1P18670_001	Banana	nucleus	21.25	21.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr8G25940_001	EnsemblPlants:GSMUA_Achr8P25940_001	EnsemblPlants:GSMUA_Achr8T25940_001	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M0TTP7	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF136
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000295CF6E	SEG:seg	:	:

Description

Homeobox-leucine zipper protein HOX16 [Source:GMGC_GENE;Acc:GSMUA_Achr8G25940_001]

Coordinates

chr8:-:29664284..29666290

Molecular Weight (calculated)

32397.7 Da

IEP (calculated)

4.591

GRAVY (calculated)

-0.661

Length

287 amino acids

Sequence
(BLAST)

001: MDSGRLIFDS ASSSSSRGPL LLWGGGNPVL RAVSPVVVGV AEKGGASKRR PFFTSPDEVY EEYYEEQLPE KKRRLTSEQV HLLERSFKEE NKLEPERKSE
101: LAQMLGLQPR QVAVWFQNRR ARWKNKQLER DFDQLKSSYD ALLFDHDALL KDNHRLRSQL STLAEKLEEA NEQGASGVTV LTVDDQAAST ADLTVLNIQQ
201: KKVEDMLSPG SGGSAVVEAE GGHHLVESSR ESYLPENYHC VELVDVVGIH SEDDMSDEGC SYYPDGMFTE HHQQEEVEAQ LDWCIWN

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.