Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P09730_001 | Banana | nucleus | 58.09 | 67.0 |
| GSMUA_Achr7P12740_001 | Banana | nucleus | 23.7 | 35.96 |
| GSMUA_Achr5P05300_001 | Banana | nucleus | 21.39 | 35.92 |
| GSMUA_Achr9P14570_001 | Banana | nucleus | 26.59 | 34.98 |
| GSMUA_Achr6P10310_001 | Banana | nucleus | 20.23 | 33.82 |
| GSMUA_Achr10P... | Banana | nucleus | 18.5 | 33.68 |
| VIT_17s0000g05630.t01 | Wine grape | nucleus | 30.64 | 33.44 |
| Solyc03g113270.2.1 | Tomato | nucleus, plastid | 31.21 | 33.44 |
| PGSC0003DMT400065207 | Potato | nucleus | 31.5 | 33.33 |
| KRH54501 | Soybean | nucleus, plastid | 30.35 | 32.21 |
| GSMUA_Achr3P06190_001 | Banana | nucleus | 25.72 | 31.45 |
| GSMUA_Achr10P... | Banana | nucleus | 22.25 | 31.17 |
| KRH56963 | Soybean | nucleus, plastid | 29.77 | 31.12 |
| GSMUA_Achr3P06620_001 | Banana | nucleus | 24.57 | 31.02 |
| KRH03417 | Soybean | nucleus, plastid | 29.48 | 31.0 |
| GSMUA_Achr10P... | Banana | nucleus | 23.41 | 30.8 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 23.12 | 30.08 |
| GSMUA_Achr9P18360_001 | Banana | nucleus | 24.57 | 30.04 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 25.14 | 29.69 |
| GSMUA_Achr8P25940_001 | Banana | nucleus | 24.57 | 29.62 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 19.94 | 29.24 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 19.36 | 28.88 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 23.41 | 28.83 |
| GSMUA_Achr7P11760_001 | Banana | nucleus | 20.81 | 28.57 |
| GSMUA_Achr2P14750_001 | Banana | extracellular, nucleus | 23.41 | 28.32 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 23.7 | 28.08 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 22.25 | 27.9 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 22.25 | 27.21 |
| KRH63409 | Soybean | nucleus, plastid | 20.81 | 27.07 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 21.68 | 26.79 |
| GSMUA_Achr10P... | Banana | nucleus | 21.97 | 26.57 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 16.76 | 26.36 |
| GSMUA_Achr9P14960_001 | Banana | nucleus | 20.23 | 24.91 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 17.34 | 20.69 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr10G27420_001 | EnsemblPlants:GSMUA_Achr10P27420_001 | EnsemblPlants:GSMUA_Achr10T27420_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | UniProt:M0RLW6 | PFAM:PF00046 | PFAM:PF02183 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF306 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI0002949C07 | SEG:seg | : | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G27420_001]
Coordinates
chr10:-:30591374..30593465
Molecular Weight (calculated)
39456.5 Da
IEP (calculated)
6.610
GRAVY (calculated)
-0.706
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGKRHHGSS NMAVLLQSQG MYKEFSGPLF APGTPSSGSL GSASGSWSLA DLKDGHGNSL ERPLFRPVEL DEIGDDDSGE YPHQPDKKRR LTTCQVQFLE
101: KSFELENKLE PERKLQIAKV LGLKPRQIAV WFQNRRARWK TKQIEKDYES LKSSYDALKM DHDSLVKEKE DLKAEVLSLT KRLLKEENGS LESFEPKRLP
201: DNLQNLDSTL AFEVKKLHGQ TMLCKQEDIS SANSAILDSE SPHHTHEGDC SMLMELNSYS NAFRLDHSDH SQIGDVDDVK HCNFLSPEDT SCGSEFHVAE
301: QIYTGTLSMS CKRWSCPICH KTLDGFHTFF FPLWRKHVDL YYRNRC
101: KSFELENKLE PERKLQIAKV LGLKPRQIAV WFQNRRARWK TKQIEKDYES LKSSYDALKM DHDSLVKEKE DLKAEVLSLT KRLLKEENGS LESFEPKRLP
201: DNLQNLDSTL AFEVKKLHGQ TMLCKQEDIS SANSAILDSE SPHHTHEGDC SMLMELNSYS NAFRLDHSDH SQIGDVDDVK HCNFLSPEDT SCGSEFHVAE
301: QIYTGTLSMS CKRWSCPICH KTLDGFHTFF FPLWRKHVDL YYRNRC
001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
Arabidopsis Description
HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.