Factsheet for PGSC0003DMT400065207

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113270.2.1	Tomato	nucleus, plastid	92.05	93.19
VIT_17s0000g05630.t01	Wine grape	nucleus	48.62	50.16
KRH54501	Soybean	nucleus, plastid	47.4	47.55
PGSC0003DMT400045471	Potato	nucleus	43.73	47.51
KRH56963	Soybean	nucleus, plastid	47.09	46.53
KRH03417	Soybean	nucleus, plastid	46.18	45.9
PGSC0003DMT400007376	Potato	nucleus	41.28	45.61
KRH63409	Soybean	nucleus, plastid	36.09	44.36
GSMUA_Achr7P09730_001	Banana	nucleus	33.64	36.67
PGSC0003DMT400001322	Potato	nucleus	31.19	35.79
PGSC0003DMT400017751	Potato	nucleus	23.55	34.22
PGSC0003DMT400002259	Potato	nucleus	23.24	32.34
GSMUA_Achr10P...	Banana	nucleus	33.33	31.5
PGSC0003DMT400003586	Potato	nucleus	22.94	31.38
PGSC0003DMT400081296	Potato	nucleus	16.82	30.73
PGSC0003DMT400006949	Potato	nucleus	21.71	29.22
PGSC0003DMT400032390	Potato	nucleus	15.6	28.81
PGSC0003DMT400065805	Potato	nucleus	26.91	28.76
PGSC0003DMT400054818	Potato	nucleus	18.35	28.3
PGSC0003DMT400079230	Potato	nucleus	25.08	28.08
PGSC0003DMT400000694	Potato	nucleus	21.41	27.78
PGSC0003DMT400047622	Potato	nucleus	18.04	27.57
PGSC0003DMT400043251	Potato	nucleus	26.3	26.46
PGSC0003DMT400041655	Potato	nucleus	27.52	25.86
PGSC0003DMT400013968	Potato	nucleus	17.74	25.78

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	UniProt:M1CDJ8	PFAM:PF00046	PFAM:PF02183	EnsemblPlantsGene:PGSC0003DMG400025342	PGSC:PGSC0003DMG400025342
EnsemblPlants:PGSC0003DMT400065207	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF306
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00029643E8	:	:	:

Description

Homeobox [Source:PGSC_GENE;Acc:PGSC0003DMG400025342]

Coordinates

chr3:+:53103041..53105307

Molecular Weight (calculated)

36833.3 Da

IEP (calculated)

4.706

GRAVY (calculated)

-0.784

Length

327 amino acids

Sequence
(BLAST)

001: MAPGILYGGA SNFDGVFTQK QRDVFSSSTA PKGHLGSLFA PACSSNFLGS SSMVSFGGVN GGKRSFFDSF DQDDNEADEL GEYFHQAEKK RRLTDNQVQF
101: LEKSFGEENK LEPERKVQLA KELGLQPRQI AIWFQNRRAR WKTKQLEKDY DELRNRYDAL KSNYNNLLKE KEDLRTEVFH LTDKLFVKEK GNGQIDLRDE
201: NKHSDALAKE TVADPISGVE MSNVPALVVK HQQEDLSSAK SDVFDSESPR YTGRVHSSVI DQGDSARVFE TEQSDLSQDD DENFSKTMLS TANLLGKAAD
301: DDYPATSSNL SYFGFPVEDQ GFGFWTY

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.