Factsheet for PGSC0003DMT400017751

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067410.1.1	Tomato	nucleus	96.0	82.13
PGSC0003DMT400003586	Potato	nucleus	65.78	61.92
PGSC0003DMT400002259	Potato	nucleus	44.44	42.55
CDY69290	Canola	nucleus	47.11	42.4
PGSC0003DMT400065805	Potato	nucleus	56.0	41.18
KRG93515	Soybean	nucleus	53.33	41.1
KRH40114	Soybean	nucleus	48.44	40.37
KRH18490	Soybean	nucleus	52.0	40.21
KRH01157	Soybean	nucleus	47.11	39.55
CDY69034	Canola	nucleus	46.67	39.18
Bra039135.1-P	Field mustard	nucleus	47.11	38.97
Bra006285.1-P	Field mustard	nucleus	47.56	37.81
Bra008717.1-P	Field mustard	nucleus	47.11	36.81
Bra023506.1-P	Field mustard	nucleus	47.11	36.68
CDY28696	Canola	nucleus	42.67	36.36
AT3G01220.1	Thale cress	nucleus	45.78	36.01
CDY70306	Canola	nucleus	46.67	35.96
CDX78614	Canola	nucleus	47.56	35.55
CDX70596	Canola	nucleus	46.67	34.54
CDX85054	Canola	nucleus	47.11	34.53
CDX69546	Canola	nucleus	47.11	34.3
AT5G15150.1	Thale cress	nucleus	46.67	33.44
PGSC0003DMT400045471	Potato	nucleus	37.33	27.91
PGSC0003DMT400081296	Potato	nucleus	21.78	27.37
PGSC0003DMT400007376	Potato	nucleus	35.56	27.03
PGSC0003DMT400001322	Potato	nucleus	34.22	27.02
PGSC0003DMT400032390	Potato	nucleus	20.44	25.99
PGSC0003DMT400047622	Potato	nucleus	23.11	24.3
PGSC0003DMT400006949	Potato	nucleus	25.78	23.87
PGSC0003DMT400065207	Potato	nucleus	34.22	23.55
PGSC0003DMT400054818	Potato	nucleus	21.78	23.11
PGSC0003DMT400013968	Potato	nucleus	23.11	23.11
PGSC0003DMT400000694	Potato	nucleus	24.89	22.22
PGSC0003DMT400043251	Potato	nucleus	31.56	21.85
PGSC0003DMT400079230	Potato	nucleus	28.0	21.58
PGSC0003DMT400041655	Potato	nucleus	32.44	20.98

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	UniProt:M1A9E4	PFAM:PF00046	PFAM:PF02183	EnsemblPlantsGene:PGSC0003DMG400006895	PGSC:PGSC0003DMG400006895
EnsemblPlants:PGSC0003DMT400017751	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF176
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000296BED9	SEG:seg	:	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006895]

Coordinates

chr2:+:25943284..25944649

Molecular Weight (calculated)

26096.4 Da

IEP (calculated)

6.884

GRAVY (calculated)

-1.073

Length

225 amino acids

Sequence
(BLAST)

001: MLMRRAMSFD HQDSRVDDID MSDDDGSSQL LGEKKRRLNL EQVKALERSF EIGNKLEPER KMQLARALGL KPRQIAIWFQ NRRARCKTKQ LEKDYEILKR
101: QCDKLKSDND ALKTQNKNLH SEILSLRNRE SGGGGTPILF NLNKENEGSN WNNGSGDENS TIIDVNLGRT SSTNSPHNNN NHDHVFQTAN FKIEEQTHEE
201: GFCNMFTNVE DQTNYWPLPV QQHFY

Best Arabidopsis Sequence Match ( AT1G26960.1 )
(BLAST)

001: MSCNNNGLAF FPENFSLQNH HQEEEDHPQL LQDFHGFLGK RSPMNNVQGF CNLDMNGDEE YSDDGSKMGE KKRRLNMEQL KALEKDFELG NKLESDRKLE
101: LARALGLQPR QIAIWFQNRR ARSKTKQLEK DYDMLKRQFE SLRDENEVLQ TQNQKLQAQV MALKSREPIE SINLNKETEG SCSDRSENIS GDIRPPEIDS
201: QFALGHPPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID DQSGFWPWLD QQQYN

Arabidopsis Description

ATHB-23Homeobox-leucine zipper protein ATHB-23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.