Factsheet for Bra039135.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69290	Canola	nucleus	89.34	97.2
AT3G01220.1	Thale cress	nucleus	86.03	81.82
Bra006285.1-P	Field mustard	nucleus	70.96	68.2
Bra023506.1-P	Field mustard	nucleus	72.06	67.82
Bra008717.1-P	Field mustard	nucleus	70.96	67.01
KRG93515	Soybean	nucleus	53.68	50.0
KRH18490	Soybean	nucleus	52.94	49.48
KRH40114	Soybean	nucleus	47.79	48.15
KRH01157	Soybean	nucleus	46.69	47.39
PGSC0003DMT400017751	Potato	nucleus	38.97	47.11
Bra016300.1-P	Field mustard	nucleus	42.65	45.67
PGSC0003DMT400003586	Potato	nucleus	40.07	45.61
Bra007881.1-P	Field mustard	nucleus	46.69	44.56
Solyc02g067410.1.1	Tomato	nucleus	42.28	43.73
Bra016266.1-P	Field mustard	nucleus	45.59	43.06
Bra003980.1-P	Field mustard	nucleus	39.71	42.86
Bra028454.1-P	Field mustard	nucleus	25.37	38.76
Solyc02g087840.2.1	Tomato	nucleus	43.75	38.51
Bra022687.1-P	Field mustard	nucleus	18.38	32.05
Bra005259.1-P	Field mustard	nucleus	20.96	30.48
Bra039116.1-P	Field mustard	nucleus	27.94	29.23
Bra040519.1-P	Field mustard	nucleus	28.68	28.47
Bra011808.1-P	Field mustard	nucleus	30.15	27.8
Bra030238.1-P	Field mustard	nucleus	29.78	27.27
Bra010642.1-P	Field mustard	nucleus	27.94	26.57
Bra031866.1-P	Field mustard	nucleus	29.41	25.81
Bra038523.1-P	Field mustard	nucleus	29.04	25.4
Bra024377.1-P	Field mustard	nucleus	28.31	25.25
Bra028820.1-P	Field mustard	nucleus	20.96	25.11
Bra009510.1-P	Field mustard	nucleus	20.96	24.78
Bra014417.1-P	Field mustard	nucleus	20.22	24.12
Bra007637.1-P	Field mustard	nucleus	20.22	23.91
Bra004516.1-P	Field mustard	nucleus	20.22	21.65
Bra039265.1-P	Field mustard	nucleus	17.65	20.96

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra039135	EnsemblPlants:Bra039135.1	EnsemblPlants:Bra039135.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009733	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
UniProt:M4FDG4	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF264	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002547764	:

Description

AT3G01220 (E=3e-135) ATHB20 | ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20); DNA binding / transcription factor

Coordinates

chrA05:+:23808837..23812598

Molecular Weight (calculated)

31492.7 Da

IEP (calculated)

6.510

GRAVY (calculated)

-1.006

Length

272 amino acids

Sequence
(BLAST)

001: MAFPQHGFMF QQLHEDISPD QLPSCLPPHP FNGGGNYMMN RSMSLTNVRD DPHQSVDEEN LSDDGSHMML GEKKKRLQLE QVKVLEKSFE LGNKLDPERK
101: IQLAKALGMQ PRQIAIWFQN RRARWKTRQL ERDYDSLKKQ FDSLKSDNDS LLAHNKKLLA EVMSLRNKDY NEASIIKREA EASWSNNGST ENSSDINLEI
201: PRETTTTHVN TIKNLFPSSI PSSTHHQDHH HQNNEMVQEE SFCNMFNGID ETTSAGYWGW SDPNHNHHHQ FN

Best Arabidopsis Sequence Match ( AT3G01220.1 )
(BLAST)

001: MYVFDPTTEA GLRLEMAFPQ HGFMFQQLHE DNSQDQLPSC PPHLFNGGGN YMMNRSMSLM NVQEDHNQTL DEENLSDDGA HTMLGEKKKR LQLEQVKALE
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN

Arabidopsis Description

ATHB-20Homeobox-leucine zipper protein ATHB-20 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAT0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.