Factsheet for Bra003980.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48391	Canola	nucleus	100.0	100.0
Bra016266.1-P	Field mustard	nucleus	84.13	73.61
AT1G69780.1	Thale cress	nucleus	85.71	73.47
Bra007881.1-P	Field mustard	nucleus	80.16	70.88
Bra016300.1-P	Field mustard	nucleus	56.75	56.3
VIT_01s0026g01950.t01	Wine grape	nucleus	61.9	54.74
KRG99129	Soybean	nucleus	57.14	51.61
KRH45876	Soybean	nucleus	56.35	50.71
KRH74821	Soybean	nucleus	57.94	50.17
Solyc05g007180.2.1	Tomato	nucleus	59.92	49.51
KRH69308	Soybean	nucleus	57.94	49.49
PGSC0003DMT400065805	Potato	nucleus	59.92	49.35
GSMUA_Achr7P11600_001	Banana	nucleus	52.38	47.83
GSMUA_Achr3P21430_001	Banana	nucleus	48.81	46.24
GSMUA_Achr6P36450_001	Banana	nucleus	42.46	46.12
VIT_14s0108g00390.t01	Wine grape	nucleus	50.79	45.23
GSMUA_Achr10P...	Banana	nucleus	50.79	44.76
GSMUA_Achr2P07420_001	Banana	nucleus	51.19	44.18
GSMUA_Achr1P21620_001	Banana	nucleus	49.21	44.13
GSMUA_Achr6P10660_001	Banana	nucleus	48.81	43.46
GSMUA_Achr4P00550_001	Banana	nucleus	48.02	43.21
GSMUA_Achr7P20950_001	Banana	nucleus	40.08	42.8
GSMUA_Achr1P12270_001	Banana	nucleus	48.81	41.98
KRG99070	Soybean	nucleus	27.38	40.12
TraesCS4B01G287600.1	Wheat	nucleus	52.38	39.88
Bra039135.1-P	Field mustard	nucleus	42.86	39.71
Zm00001d027852_P001	Maize	nucleus	53.17	38.95
TraesCS4D01G286400.2	Wheat	nucleus	52.38	38.94
EER92780	Sorghum	nucleus	54.37	38.59
TraesCS4A01G016600.1	Wheat	nucleus, plastid	51.59	38.46
Bra006285.1-P	Field mustard	nucleus	42.46	37.81
Bra023506.1-P	Field mustard	nucleus	42.86	37.37
Zm00001d048312_P001	Maize	nucleus	50.79	37.21
Bra008717.1-P	Field mustard	nucleus	42.06	36.81
HORVU4Hr1G075170.1	Barley	nucleus	34.52	33.98
HORVU4Hr1G075180.3	Barley	nucleus, plastid	52.38	33.5
Bra028454.1-P	Field mustard	nucleus	23.41	33.15
Zm00001d014201_P001	Maize	nucleus	43.65	31.61
Os10t0404900-01	Rice	nucleus	44.44	31.55
EER94272	Sorghum	nucleus	45.24	31.49
Zm00001d033005_P001	Maize	nucleus	43.25	30.03
Bra005259.1-P	Field mustard	nucleus	21.43	28.88
Bra039116.1-P	Field mustard	nucleus	29.37	28.46
Bra022687.1-P	Field mustard	nucleus	17.06	27.56
Bra040519.1-P	Field mustard	nucleus	29.37	27.01
Bra030238.1-P	Field mustard	nucleus	30.95	26.26
Bra024377.1-P	Field mustard	nucleus	31.35	25.9
Bra031866.1-P	Field mustard	nucleus	31.35	25.48
Bra011808.1-P	Field mustard	nucleus	29.76	25.42
Bra038523.1-P	Field mustard	nucleus	30.95	25.08
Bra010642.1-P	Field mustard	nucleus	28.17	24.83
Bra014417.1-P	Field mustard	nucleus	21.43	23.68
Bra007637.1-P	Field mustard	nucleus	21.03	23.04
Bra028820.1-P	Field mustard	nucleus	20.63	22.91
Bra039265.1-P	Field mustard	nucleus	20.63	22.71
Bra009510.1-P	Field mustard	nucleus	19.84	21.74
Bra004516.1-P	Field mustard	nucleus	21.43	21.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra003980	EnsemblPlants:Bra003980.1	EnsemblPlants:Bra003980.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4CIE7	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF176
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002541969	SEG:seg	:	:

Description

AT1G69780 (E=2e-091) ATHB13 | ATHB13; DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA07:-:16095644..16096936

Molecular Weight (calculated)

28493.6 Da

IEP (calculated)

7.047

GRAVY (calculated)

-0.852

Length

252 amino acids

Sequence
(BLAST)

001: MSCNSGMSFF PSSFMIQNSY EDDHPHQTPA LAPLLPSCSM PQDLNGFASF IGKQILEEDY SDDGSQMGEK KRRLNMEQVK TLEKTFELGN KLEPERKMQL
101: ARVLGLQPRQ IAIWFQNRRA RWKTKQLEKD YDTLKLKFDA LKAENDRLQT HNEKLQAEIM GLENKEQTKS INLNKETEGS CSNKSDNISD NPRLDISRPP
201: PPSIENTITA GHPPPPQTVG RHFFPPSPAT ATTTTTTLQF FQNSSSGQSI YG

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.