CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027852_P001	Maize	nucleus	87.32	90.12
Zm00001d048312_P001	Maize	nucleus	82.54	85.17
TraesCS4B01G287600.1	Wheat	nucleus	73.24	78.55
TraesCS4D01G286400.2	Wheat	nucleus	73.52	76.99
TraesCS4A01G016600.1	Wheat	nucleus, plastid	72.96	76.63
HORVU4Hr1G075180.3	Barley	nucleus, plastid	74.93	67.51
GSMUA_Achr1P21620_001	Banana	nucleus	51.83	65.48
GSMUA_Achr2P07420_001	Banana	nucleus	52.96	64.38
GSMUA_Achr6P10660_001	Banana	nucleus	50.14	62.9
VIT_01s0026g01950.t01	Wine grape	nucleus	50.42	62.81
GSMUA_Achr7P11600_001	Banana	nucleus	48.45	62.32
GSMUA_Achr1P12270_001	Banana	nucleus	50.14	60.75
GSMUA_Achr10P...	Banana	nucleus	48.45	60.14
KRG99129	Soybean	nucleus	46.76	59.5
KRH74821	Soybean	nucleus	48.73	59.45
KRH69308	Soybean	nucleus	49.01	58.98
KRH45876	Soybean	nucleus	45.92	58.21
EER94272	Sorghum	nucleus	59.15	58.01
GSMUA_Achr3P21430_001	Banana	nucleus	43.38	57.89
PGSC0003DMT400065805	Potato	nucleus	49.3	57.19
Solyc05g007180.2.1	Tomato	nucleus	49.01	57.05
CDY44091	Canola	nucleus	42.54	56.77
VIT_14s0108g00390.t01	Wine grape	nucleus	45.07	56.54
PGSC0003DMT400002259	Potato	nucleus	37.18	56.17
AT1G69780.1	Thale cress	nucleus	46.2	55.78
Bra007881.1-P	Field mustard	nucleus	44.51	55.44
CDY38759	Canola	nucleus	44.23	55.28
Bra016266.1-P	Field mustard	nucleus	44.79	55.21
CDY11659	Canola	nucleus	44.51	54.86
KRG99070	Soybean	nucleus	26.48	54.65
Bra003980.1-P	Field mustard	nucleus	38.59	54.37
CDY48391	Canola	nucleus	38.59	54.37
Solyc01g010600.2.1	Tomato	nucleus	36.62	53.5
HORVU4Hr1G075170.1	Barley	nucleus	38.03	52.73
CDY23547	Canola	nucleus	41.41	52.5
CDY70870	Canola	nucleus	44.51	52.49
GSMUA_Achr6P36450_001	Banana	nucleus	33.8	51.72
GSMUA_Achr4P00550_001	Banana	nucleus	40.56	51.43
GSMUA_Achr7P20950_001	Banana	nucleus	34.08	51.27
OQU81036	Sorghum	nucleus	21.13	40.76
EER96901	Sorghum	nucleus	24.79	32.23
KXG25140	Sorghum	nucleus	24.23	31.27
EES05814	Sorghum	nucleus	20.56	29.2
EER98832	Sorghum	nucleus	23.94	26.81
KXG30829	Sorghum	nucleus	24.79	25.81
EER99231	Sorghum	nucleus	17.46	25.51
EES11198	Sorghum	nucleus	18.59	24.44
EER92730	Sorghum	nucleus	22.25	24.38

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8059811	UniProt:C5WVY2	ncoils:Coil	EnsemblPlants:EER92780
ProteinID:EER92780	ProteinID:EER92780.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF176	SMART:SM00389	EnsemblPlantsGene:SORBI_3001G488900	SUPFAM:SSF46689	UniParc:UPI0001A82A56	RefSeq:XP_002465782.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:75920535..75923262

Molecular Weight (calculated)

38889.5 Da

IEP (calculated)

6.775

GRAVY (calculated)

-0.789

Length

355 amino acids

Sequence
(BLAST)

001: MRPMASNGMA SSPSPFFPPN FLLQMQQTPS DHDPQEQQHH HHHHHHHEHH LPAPPLHPHH NPFLPSSQCP SLQDFRGMAP MLGKRPMYGA DVVAGGGDEV
101: NGCGGGGGAN EDELSDDGSQ AGEKKRRLNV EQVRTLEKNF ELGNKLEPER KLQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDYDALKR QLDAVKADND
201: ALLSHNKKLQ AEILALKGGR EAGSSELINL NKETEASCSN RSENSSEINL DISRTPPSEG PMDPPPPHQH PHQHHHAAGG GLIPFYPSVG GGRPAAAAGV
301: DIDQLVLHTS ITPKLEPLGN GAAVQAAETA SFGNLLCGVD EPPPFWPWAD HQHFH

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.