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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g010600.2.1 Tomato nucleus 92.34 89.3
VIT_01s0026g01950.t01 Wine grape nucleus 68.09 56.14
KRG99129 Soybean nucleus 66.38 55.91
PGSC0003DMT400065805 Potato nucleus 70.64 54.25
KRH45876 Soybean nucleus 64.26 53.93
KRH74821 Soybean nucleus 65.11 52.58
KRH69308 Soybean nucleus 65.11 51.86
VIT_14s0108g00390.t01 Wine grape nucleus 60.0 49.82
KRG99070 Soybean nucleus 35.32 48.26
GSMUA_Achr6P36450_001 Banana nucleus 46.81 47.41
GSMUA_Achr7P11600_001 Banana nucleus 54.89 46.74
GSMUA_Achr3P21430_001 Banana nucleus 51.91 45.86
GSMUA_Achr2P07420_001 Banana nucleus 56.17 45.21
GSMUA_Achr7P20950_001 Banana nucleus 45.11 44.92
GSMUA_Achr1P21620_001 Banana nucleus 53.62 44.84
PGSC0003DMT400017751 Potato nucleus 42.55 44.44
GSMUA_Achr10P... Banana nucleus 54.04 44.41
GSMUA_Achr1P12270_001 Banana nucleus 55.32 44.37
GSMUA_Achr4P00550_001 Banana nucleus 52.34 43.93
GSMUA_Achr6P10660_001 Banana nucleus 52.34 43.46
PGSC0003DMT400003586 Potato nucleus 43.4 42.68
TraesCS4B01G287600.1 Wheat nucleus 54.89 38.97
Zm00001d027852_P001 Maize nucleus 55.74 38.08
TraesCS4D01G286400.2 Wheat nucleus 54.89 38.05
TraesCS4A01G016600.1 Wheat nucleus, plastid 54.47 37.87
EER92780 Sorghum nucleus 56.17 37.18
Zm00001d048312_P001 Maize nucleus 53.62 36.63
PGSC0003DMT400081296 Potato nucleus 25.11 32.96
Zm00001d014201_P001 Maize nucleus 48.51 32.76
HORVU4Hr1G075180.3 Barley nucleus, plastid 54.89 32.74
EER94272 Sorghum nucleus 49.36 32.04
HORVU4Hr1G075170.1 Barley nucleus 34.89 32.03
Os10t0404900-01 Rice nucleus 48.09 31.83
Zm00001d033005_P001 Maize nucleus 46.81 30.3
PGSC0003DMT400032390 Potato nucleus 22.13 29.38
PGSC0003DMT400007376 Potato nucleus 34.47 27.36
PGSC0003DMT400045471 Potato nucleus 34.47 26.91
PGSC0003DMT400054818 Potato nucleus 24.26 26.89
PGSC0003DMT400013968 Potato nucleus 25.53 26.67
PGSC0003DMT400001322 Potato nucleus 31.91 26.32
PGSC0003DMT400047622 Potato nucleus 23.4 25.7
PGSC0003DMT400006949 Potato nucleus 25.11 24.28
PGSC0003DMT400000694 Potato nucleus 25.96 24.21
PGSC0003DMT400065207 Potato nucleus 32.34 23.24
PGSC0003DMT400043251 Potato nucleus 31.91 23.08
PGSC0003DMT400041655 Potato nucleus 32.77 22.13
PGSC0003DMT400079230 Potato nucleus 27.23 21.92
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0043565InterPro:HTH_motifInterPro:Homeobox-like_sfInterPro:Homeobox_CSInterPro:Homeobox_domInterPro:IPR001356
InterPro:Leu_zip_homeoUniProt:M0ZJU9PFAM:PF00046PFAM:PF02183EnsemblPlantsGene:PGSC0003DMG400000863PGSC:PGSC0003DMG400000863
EnsemblPlants:PGSC0003DMT400002259PRINTS:PR00031ScanProsite:PS00027PFscan:PS50071PANTHER:PTHR24326PANTHER:PTHR24326:SF176
SMART:SM00389SUPFAM:SSF46689UniParc:UPI000296D304:::
Description
DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000863]
Coordinates
chr1:-:13274062..13279235
Molecular Weight (calculated)
27363.2 Da
IEP (calculated)
6.588
GRAVY (calculated)
-0.903
Length
235 amino acids
Sequence
(BLAST)
001: MDFFPTNFML HTPHEDNHQD FHGVTSFLEK KSMSFSNKCD DQNHGDQEDV LSDDGTHHEA ILREKKIRRL NMEQVKTLEK NFELGNKLEA ERKVQLARAL
101: GLQPRQVAIW FQNRRARWKT KQLEKDYDVL KREFDAIKAQ NEALLAHNHK LHVEIMTLKN GKGPTESINL NKETDQGSIC STRSENSSEI IKLQCNNMKL
201: MDQTVKEETL SNIFSGIDDN SAGFWPWLDQ QPHFN
Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
Arabidopsis Description
ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.