Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g010600.2.1 | Tomato | nucleus | 92.34 | 89.3 |
VIT_01s0026g01950.t01 | Wine grape | nucleus | 68.09 | 56.14 |
KRG99129 | Soybean | nucleus | 66.38 | 55.91 |
PGSC0003DMT400065805 | Potato | nucleus | 70.64 | 54.25 |
KRH45876 | Soybean | nucleus | 64.26 | 53.93 |
KRH74821 | Soybean | nucleus | 65.11 | 52.58 |
KRH69308 | Soybean | nucleus | 65.11 | 51.86 |
VIT_14s0108g00390.t01 | Wine grape | nucleus | 60.0 | 49.82 |
KRG99070 | Soybean | nucleus | 35.32 | 48.26 |
GSMUA_Achr6P36450_001 | Banana | nucleus | 46.81 | 47.41 |
GSMUA_Achr7P11600_001 | Banana | nucleus | 54.89 | 46.74 |
GSMUA_Achr3P21430_001 | Banana | nucleus | 51.91 | 45.86 |
GSMUA_Achr2P07420_001 | Banana | nucleus | 56.17 | 45.21 |
GSMUA_Achr7P20950_001 | Banana | nucleus | 45.11 | 44.92 |
GSMUA_Achr1P21620_001 | Banana | nucleus | 53.62 | 44.84 |
PGSC0003DMT400017751 | Potato | nucleus | 42.55 | 44.44 |
GSMUA_Achr10P... | Banana | nucleus | 54.04 | 44.41 |
GSMUA_Achr1P12270_001 | Banana | nucleus | 55.32 | 44.37 |
GSMUA_Achr4P00550_001 | Banana | nucleus | 52.34 | 43.93 |
GSMUA_Achr6P10660_001 | Banana | nucleus | 52.34 | 43.46 |
PGSC0003DMT400003586 | Potato | nucleus | 43.4 | 42.68 |
TraesCS4B01G287600.1 | Wheat | nucleus | 54.89 | 38.97 |
Zm00001d027852_P001 | Maize | nucleus | 55.74 | 38.08 |
TraesCS4D01G286400.2 | Wheat | nucleus | 54.89 | 38.05 |
TraesCS4A01G016600.1 | Wheat | nucleus, plastid | 54.47 | 37.87 |
EER92780 | Sorghum | nucleus | 56.17 | 37.18 |
Zm00001d048312_P001 | Maize | nucleus | 53.62 | 36.63 |
PGSC0003DMT400081296 | Potato | nucleus | 25.11 | 32.96 |
Zm00001d014201_P001 | Maize | nucleus | 48.51 | 32.76 |
HORVU4Hr1G075180.3 | Barley | nucleus, plastid | 54.89 | 32.74 |
EER94272 | Sorghum | nucleus | 49.36 | 32.04 |
HORVU4Hr1G075170.1 | Barley | nucleus | 34.89 | 32.03 |
Os10t0404900-01 | Rice | nucleus | 48.09 | 31.83 |
Zm00001d033005_P001 | Maize | nucleus | 46.81 | 30.3 |
PGSC0003DMT400032390 | Potato | nucleus | 22.13 | 29.38 |
PGSC0003DMT400007376 | Potato | nucleus | 34.47 | 27.36 |
PGSC0003DMT400045471 | Potato | nucleus | 34.47 | 26.91 |
PGSC0003DMT400054818 | Potato | nucleus | 24.26 | 26.89 |
PGSC0003DMT400013968 | Potato | nucleus | 25.53 | 26.67 |
PGSC0003DMT400001322 | Potato | nucleus | 31.91 | 26.32 |
PGSC0003DMT400047622 | Potato | nucleus | 23.4 | 25.7 |
PGSC0003DMT400006949 | Potato | nucleus | 25.11 | 24.28 |
PGSC0003DMT400000694 | Potato | nucleus | 25.96 | 24.21 |
PGSC0003DMT400065207 | Potato | nucleus | 32.34 | 23.24 |
PGSC0003DMT400043251 | Potato | nucleus | 31.91 | 23.08 |
PGSC0003DMT400041655 | Potato | nucleus | 32.77 | 22.13 |
PGSC0003DMT400079230 | Potato | nucleus | 27.23 | 21.92 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
InterPro:Leu_zip_homeo | UniProt:M0ZJU9 | PFAM:PF00046 | PFAM:PF02183 | EnsemblPlantsGene:PGSC0003DMG400000863 | PGSC:PGSC0003DMG400000863 |
EnsemblPlants:PGSC0003DMT400002259 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF176 |
SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000296D304 | : | : | : |
Description
DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000863]
Coordinates
chr1:-:13274062..13279235
Molecular Weight (calculated)
27363.2 Da
IEP (calculated)
6.588
GRAVY (calculated)
-0.903
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFFPTNFML HTPHEDNHQD FHGVTSFLEK KSMSFSNKCD DQNHGDQEDV LSDDGTHHEA ILREKKIRRL NMEQVKTLEK NFELGNKLEA ERKVQLARAL
101: GLQPRQVAIW FQNRRARWKT KQLEKDYDVL KREFDAIKAQ NEALLAHNHK LHVEIMTLKN GKGPTESINL NKETDQGSIC STRSENSSEI IKLQCNNMKL
201: MDQTVKEETL SNIFSGIDDN SAGFWPWLDQ QPHFN
101: GLQPRQVAIW FQNRRARWKT KQLEKDYDVL KREFDAIKAQ NEALLAHNHK LHVEIMTLKN GKGPTESINL NKETDQGSIC STRSENSSEI IKLQCNNMKL
201: MDQTVKEETL SNIFSGIDDN SAGFWPWLDQ QPHFN
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
Arabidopsis Description
ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.