Factsheet for TraesCS4D01G286400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G287600.1	Wheat	nucleus	97.05	99.4
TraesCS4A01G016600.1	Wheat	nucleus, plastid	94.1	94.38
HORVU4Hr1G075180.3	Barley	nucleus, plastid	95.87	82.49
EER92780	Sorghum	nucleus	76.99	73.52
Zm00001d027852_P001	Maize	nucleus	74.34	73.26
Zm00001d048312_P001	Maize	nucleus	72.27	71.22
GSMUA_Achr2P07420_001	Banana	nucleus	53.39	61.99
GSMUA_Achr1P21620_001	Banana	nucleus	51.33	61.92
HORVU4Hr1G075170.1	Barley	nucleus	45.43	60.16
VIT_01s0026g01950.t01	Wine grape	nucleus	50.44	60.0
GSMUA_Achr6P10660_001	Banana	nucleus	49.85	59.72
GSMUA_Achr1P12270_001	Banana	nucleus	51.03	59.04
GSMUA_Achr7P11600_001	Banana	nucleus	47.49	58.33
KRG99129	Soybean	nucleus	47.79	58.06
KRH74821	Soybean	nucleus	49.56	57.73
GSMUA_Achr3P21430_001	Banana	nucleus	45.13	57.52
KRH45876	Soybean	nucleus	47.2	57.14
KRH69308	Soybean	nucleus	49.26	56.61
Os10t0404900-01	Rice	nucleus	59.0	56.34
EER94272	Sorghum	nucleus	59.88	56.08
GSMUA_Achr10P...	Banana	nucleus	47.2	55.94
Zm00001d014201_P001	Maize	nucleus	56.64	55.17
Solyc05g007180.2.1	Tomato	nucleus	49.56	55.08
PGSC0003DMT400065805	Potato	nucleus	49.56	54.9
PGSC0003DMT400002259	Potato	nucleus	38.05	54.89
AT1G69780.1	Thale cress	nucleus	46.9	54.08
KRG99070	Soybean	nucleus	27.43	54.07
VIT_14s0108g00390.t01	Wine grape	nucleus	45.13	54.06
CDY44091	Canola	nucleus	42.18	53.76
Bra007881.1-P	Field mustard	nucleus	44.54	52.98
CDY38759	Canola	nucleus	43.95	52.46
Bra016266.1-P	Field mustard	nucleus	44.54	52.43
Bra003980.1-P	Field mustard	nucleus	38.94	52.38
CDY48391	Canola	nucleus	38.94	52.38
CDY11659	Canola	nucleus	44.25	52.08
Solyc01g010600.2.1	Tomato	nucleus	37.17	51.85
GSMUA_Achr6P36450_001	Banana	nucleus	35.4	51.72
CDY23547	Canola	nucleus	42.48	51.43
GSMUA_Achr7P20950_001	Banana	nucleus	35.69	51.27
Zm00001d033005_P001	Maize	nucleus	54.87	51.24
GSMUA_Achr4P00550_001	Banana	nucleus	41.89	50.71
CDY70870	Canola	nucleus	44.54	50.17
TraesCS5D01G256200.1	Wheat	nucleus	27.43	34.44
TraesCS6D01G222600.1	Wheat	nucleus	20.06	30.22
TraesCS5D01G205000.1	Wheat	nucleus	23.3	26.42
TraesCS2D01G387300.1	Wheat	nucleus	18.29	25.51
TraesCS5D01G323100.2	Wheat	nucleus	17.4	23.69
TraesCS6D01G272000.1	Wheat	nucleus	25.96	23.53
TraesCS4D01G303500.1	Wheat	nucleus	21.53	23.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009744	GO:GO:0009790
GO:GO:0009791	GO:GO:0009965	GO:GO:0009987	GO:GO:0043565	GO:GO:0048826	GO:GO:0080022
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF176	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS4D01G286400	EnsemblPlants:TraesCS4D01G286400.2	TIGR:cd00086
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:457074633..457076703

Molecular Weight (calculated)

37550.0 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.871

Length

339 amino acids

Sequence
(BLAST)

001: MASNGMASSP SAFFPPNFLL HMQQAPPQHD PQEHHQQHHH HHHEHHLPPP HPQHNPFLPS PQCPSLQDFR GGRHIHNFMP CLSPMLGKRP AMYGGGDGGC
101: GGDEVTGGGA NEEETSDDGS QLGGEKKRRL NVEQVRTLEK NFEVANKLEP ERKMQLARAL GLQPRQVAIW FQNRRARWKT KQLEKDYDVL KRQFDAVKAE
201: NDALLSHNKK LQSEILGLKG CREAASELIN LNKETEASCS NRSENSSEIN LDISRTPPSD GPMDAPPSHQ QGGGGGGMIP FYPSVARPAG VDIDHLLHAS
301: VPKMEHHHGG PDTASFGNLL CGVDEPPPFW PWADHQQFN

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.