Factsheet for TraesCS4B01G287600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G286400.2	Wheat	nucleus	99.4	97.05
TraesCS4A01G016600.1	Wheat	nucleus, plastid	96.37	94.38
HORVU4Hr1G075180.3	Barley	nucleus, plastid	97.89	82.23
EER92780	Sorghum	nucleus	78.55	73.24
Zm00001d027852_P001	Maize	nucleus	75.83	72.97
Zm00001d048312_P001	Maize	nucleus	73.72	70.93
GSMUA_Achr2P07420_001	Banana	nucleus	54.68	61.99
GSMUA_Achr1P21620_001	Banana	nucleus	52.57	61.92
HORVU4Hr1G075170.1	Barley	nucleus	46.53	60.16
VIT_01s0026g01950.t01	Wine grape	nucleus	51.66	60.0
GSMUA_Achr6P10660_001	Banana	nucleus	51.06	59.72
GSMUA_Achr1P12270_001	Banana	nucleus	52.27	59.04
GSMUA_Achr7P11600_001	Banana	nucleus	48.64	58.33
KRG99129	Soybean	nucleus	48.94	58.06
KRH74821	Soybean	nucleus	50.76	57.73
GSMUA_Achr3P21430_001	Banana	nucleus	46.22	57.52
KRH45876	Soybean	nucleus	48.34	57.14
KRH69308	Soybean	nucleus	50.45	56.61
EER94272	Sorghum	nucleus	61.33	56.08
Os10t0404900-01	Rice	nucleus	60.12	56.06
GSMUA_Achr10P...	Banana	nucleus	48.34	55.94
Zm00001d014201_P001	Maize	nucleus	58.01	55.17
Solyc05g007180.2.1	Tomato	nucleus	50.76	55.08
PGSC0003DMT400065805	Potato	nucleus	50.76	54.9
PGSC0003DMT400002259	Potato	nucleus	38.97	54.89
AT1G69780.1	Thale cress	nucleus	48.04	54.08
KRG99070	Soybean	nucleus	28.1	54.07
VIT_14s0108g00390.t01	Wine grape	nucleus	46.22	54.06
CDY44091	Canola	nucleus	43.2	53.76
Bra007881.1-P	Field mustard	nucleus	45.62	52.98
CDY38759	Canola	nucleus	45.02	52.46
Bra016266.1-P	Field mustard	nucleus	45.62	52.43
Bra003980.1-P	Field mustard	nucleus	39.88	52.38
CDY48391	Canola	nucleus	39.88	52.38
CDY11659	Canola	nucleus	45.32	52.08
Solyc01g010600.2.1	Tomato	nucleus	38.07	51.85
GSMUA_Achr6P36450_001	Banana	nucleus	36.25	51.72
CDY23547	Canola	nucleus	43.5	51.43
GSMUA_Achr7P20950_001	Banana	nucleus	36.56	51.27
Zm00001d033005_P001	Maize	nucleus	56.19	51.24
GSMUA_Achr4P00550_001	Banana	nucleus	42.9	50.71
CDY70870	Canola	nucleus	45.62	50.17
TraesCS5B01G246700.1	Wheat	nucleus	27.79	34.2
TraesCS6B01G284300.1	Wheat	nucleus	19.94	29.2
TraesCS5B01G197700.1	Wheat	nucleus	24.17	26.76
TraesCS6B01G321100.1	Wheat	nucleus	26.59	25.66
TraesCS2B01G407600.1	Wheat	nucleus	19.64	25.0
TraesCS5B01G317400.1	Wheat	nucleus	17.82	23.69
TraesCS4B01G305300.1	Wheat	nucleus	22.05	23.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009744	GO:GO:0009790
GO:GO:0009791	GO:GO:0009965	GO:GO:0009987	GO:GO:0043565	GO:GO:0048826	GO:GO:0080022
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF176	SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS4B01G287600	EnsemblPlants:TraesCS4B01G287600.1	TIGR:cd00086
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:571047644..571049696

Molecular Weight (calculated)

36496.7 Da

IEP (calculated)

6.661

GRAVY (calculated)

-0.890

Length

331 amino acids

Sequence
(BLAST)

001: MASNGMASSP SAFFPPNFLL HMQQAPPQHD PQEHHQQHHH HHHEHHLPPP HPQHNPFLPS PQCPSLQDFR GGLSPMLGKR PAMYGGGGDG GCGGDEVTGG
101: GANEEETSDD GSQLGGEKKR RLNVEQVRTL EKNFEVANKL EPERKMQLAR ALGLQPRQVA IWFQNRRARW KTKQLEKDYD VLKRQFDAVK AENDALLSHN
201: KKLQSEILGL KGCREAASEL INLNKETEAS CSNRSENSSE INLDISRTPP SDGPMDAPPS HQQGGGGGGM IPFYPSVARP AGVDIDHLLH ASVPKMEHHH
301: GGPDTPSFGN LLCGVDEPPP FWPWADHQQF N

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.